Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0758 ATGGGTTCGGTTGGAGGGGAAGAGGCCATCCACCAGCCTACTGGCCATGATGAGAGGATTCTTGTTTCTGTTCGTCTTCGTCCCCTCAATGAAAAGGAGCTTGCAAGAAATGATCTTTCAGACTGGGAATGTATCAATGATACTACCATCATATACAGGAGCAACCTTTCGGCTTCTGACAGGTCACTCTACCCAACAGCGTATTCCTTTGACAATGTGTTTCGGTCGGATTGTTCCACAAGGCAGGTGTACGAAAAAGCAGCTAAGGAAGTTGCTCTTTCAGTTGTCGGTGGCATCAACTCAAGCATTTTTGCATATGGACAAACAAGCAGCGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTAGCAGATATTTTTAAGTACATAGAGATGCACACAGAAAGAGAATTCGTTTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTCAGGGACCTCCTTAGTCCAGACTGTACTCCTCTCAGACTTCTTGATGATCCAGAGAGAGGGACAGTTGTTGAGAAACTGACAGAGGAAACTATAAGAGATTGGGAACACTTTACAGAACTTATTTCTTTCAGTGAAGCTCAAAGACAGATAGGGGAGACAGCACTGAATGAAGCCAGCTCCAGATCTCATCAAATTCTTAGACTGACAATTGAAAGTTCTTCATGCGAGTTCCTTGGAAATGACAAGTCTAGCTCTCTTTCCGCTTCAGTGAATTTTGTTGATCTAGCTGGAAGTGAGAGAGCATCCCAAACCAATTCAGCTGGTACGAGATTGAAAGAGGGTTGCCACATAAATCGTAGCTTATTAACTCTAGGAACTGTTATCCGCAAACTCAGCAAGGGAAGAAATGGACATTTTCCTTTCAGAGATTCAAAGCTAACCCGCATATTGCAGTCCTCGTTAGGAGGCAACGCCAGAACTGCTATCATCTGCACCATGAGCCCTGCACGCAGCTATGTTGAACAAACCAGAAACACCCTATTATTTGCAAGCTGTGCAAAAGAAGTGACAACTAATGCACAAGTCAACGTAGTGATGTCTGATAAAGCACTAGTCAAGCAATTACAGAAAGAGTTGGCTAGGCTGGAAGACGAATTGAGAAACTCAGGGCCACCCCACGTTACATCTGATGCTTCTGCAATGTTGAGAGAAAAAGACCGTCAAATTGAGATGTTAAAGAAAGAGGTTAAAGAGCTGACCCTGCAACGGGACCTTGCACAATCTCGAATTAATGAGATGATAAGAGTGCATGGAGATGATGTGTCATCAATAGATATGCTCCAAGTGGAAAGTTTGGATGCTCAATACCCAAATTTACATGTGAGAAATTCATGGAACATAGAAAATCAAAGAGAGGAGCCAAATGTACTAAGTCTTGACGGCGAAGAGAGTGTCAGGTCTTTTGATGCATCTCAATATTCAGATGGACATAGTTTTAGTTCTGATGACAACTTATTCCAGCTGCCTGACCTTGAAAAGAATCTTCTGGTGAGAAGTTCTTCCCCAGGTCCTCCTGTCAAAAGGAACGATTCTGTAACCAATGATTTGGATAAGAATAACGTTCGAGATCAGCATGAAGAGGACAATTGTAAGGAAGTTAGGTGCATTGAGTTAGAAGATCTTAGTACAAACACTCATAAGCAATCAAACCCTGAAGATTCAAGATCAAATACATACACTAATTCCAATGCATCGACTCCTAGAGCAAGCAAAACAATCTCAGGATTGATTGTGGCTGATAATAGAGACAAGGAAAAAGTAGCTTTGAGTTCATCTAGGTCAAAGGAAGACAAGAGAGTGAACCATTTGCCTCAAGATTTTGTTCTTCCCTCTCCAAAAGAAATTTCTGTCTGCATGACAGGAAACAGTAGAAGTGGTACTTCTAGAGCCGTGAGGCTGAGCCGAAGTAAAAGTTGTAAAGCAAGTCTCATGAGGAATTTTTCATCAGATTGGTTTGAAGATGAAGACGATGTTCAGAACACACCACCAATAGGGAATGAAAAACACTTCCCTGGAAGACCCAACGGCTTCCCGAAGAACATTTATGCATTAAATTATAATGCCAGACAACGGGGGCTTTCATGTAATGGCCATGGGAATTTTGTGCAAAATTCTGCAGCTGATATAGTTCAGAATGTGAAATCGTCCACAAACAAGGAAAGCAAGTGTGATGCTCCCTTGCCTCCAAAAGGAAAGGAATCAGAAAATCTAAAGAGGTTGAATTTACTAGCTGACCGTGAGGCTCCGGAGACAGGATTGGATCCCATCATATCTGCACAGGATGTCAAAGATGTTGGCTTGGACCCAATGGAAGCTGATGATAGAGAAATTCATTCAGATTGGCCTTCAAAATTCAAGAGGCTCCAAAGAGAGATCATTGAATTCTGGGGTGCTTGTAATGTTTCATTGGTTCACAGGACATACTTTTTCCTTCTATTCAAAGGGGACCAAACAGATTCTTTTTACATGGAGGTGGAGCTGAGAAGACTATCATACCTTAAGCAAGCTTTTTCCAAAGGCAATCAGACAGTGGAAGATGGAAGAATCCTCAAACCTGAGTCAAGCATGAGATATCTTAGAAAAGAGAGGCAAATGTTGAGCAAGCAAATGCATAAGCGACTGTCTAAAGATGACAGACAGAACCTGTACTTGAAATGGGGGCTTCGTTTGAGTTCAAAGAATAGGAGTTTGCAGTTGGCCCATAGATTGTGGACTGACACAAAAGACATGGACCACATTAGAGACAGTGCATCAATAGTTGCAAAGTTGGTTGGATTAGTGGAGCCAGAGCAAGCTTTTAAGGAGATGTTTGGACTTAACTTTACCCCACAACCCACCAGTAGGAAATCTTTTAGCTGGACAGCCAGTGTGAGGCATATTTTGTGA 2907 0.4207 MGSVGGEEAIHQPTGHDERILVSVRLRPLNEKELARNDLSDWECINDTTIIYRSNLSASDRSLYPTAYSFDNVFRSDCSTRQVYEKAAKEVALSVVGGINSSIFAYGQTSSGKTYTMSGITEYTVADIFKYIEMHTEREFVLKFSAIEIYNESVRDLLSPDCTPLRLLDDPERGTVVEKLTEETIRDWEHFTELISFSEAQRQIGETALNEASSRSHQILRLTIESSSCEFLGNDKSSSLSASVNFVDLAGSERASQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHFPFRDSKLTRILQSSLGGNARTAIICTMSPARSYVEQTRNTLLFASCAKEVTTNAQVNVVMSDKALVKQLQKELARLEDELRNSGPPHVTSDASAMLREKDRQIEMLKKEVKELTLQRDLAQSRINEMIRVHGDDVSSIDMLQVESLDAQYPNLHVRNSWNIENQREEPNVLSLDGEESVRSFDASQYSDGHSFSSDDNLFQLPDLEKNLLVRSSSPGPPVKRNDSVTNDLDKNNVRDQHEEDNCKEVRCIELEDLSTNTHKQSNPEDSRSNTYTNSNASTPRASKTISGLIVADNRDKEKVALSSSRSKEDKRVNHLPQDFVLPSPKEISVCMTGNSRSGTSRAVRLSRSKSCKASLMRNFSSDWFEDEDDVQNTPPIGNEKHFPGRPNGFPKNIYALNYNARQRGLSCNGHGNFVQNSAADIVQNVKSSTNKESKCDAPLPPKGKESENLKRLNLLADREAPETGLDPIISAQDVKDVGLDPMEADDREIHSDWPSKFKRLQREIIEFWGACNVSLVHRTYFFLLFKGDQTDSFYMEVELRRLSYLKQAFSKGNQTVEDGRILKPESSMRYLRKERQMLSKQMHKRLSKDDRQNLYLKWGLRLSSKNRSLQLAHRLWTDTKDMDHIRDSASIVAKLVGLVEPEQAFKEMFGLNFTPQPTSRKSFSWTASVRHIL* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0758 968 SMART kinesin_4 17 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0758 968 PANTHER CENTROMERE PROTEIN E 3 968 - -
Vra11g0758 968 MobiDBLite consensus disorder prediction 518 534 - -
Vra11g0758 968 Pfam Kinesin motor domain 25 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0758 968 Coils Coil 389 416 - -
Vra11g0758 968 MobiDBLite consensus disorder prediction 549 585 - -
Vra11g0758 968 ProSiteProfiles Kinesin motor domain profile. 19 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0758 968 ProSitePatterns Kinesin motor domain signature. 242 253 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra11g0758 968 PANTHER ATP-BINDING MICROTUBULE MOTOR FAMILY PROTEIN 3 968 - -
Vra11g0758 968 CDD KISc_CENP_E 20 343 - -
Vra11g0758 968 PRINTS Kinesin heavy chain signature 98 119 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0758 968 PRINTS Kinesin heavy chain signature 207 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0758 968 PRINTS Kinesin heavy chain signature 243 261 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0758 968 PRINTS Kinesin heavy chain signature 293 314 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra11g0758 968 Gene3D Kinesin motor domain 10 374 IPR036961 -
Vra11g0758 968 Pfam Domain of unknown function (DUF3490) 791 951 IPR021881 -
Vra11g0758 968 Coils Coil 352 372 - -
Vra11g0758 968 MobiDBLite consensus disorder prediction 549 579 - -
Vra11g0758 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 375 IPR027417 -
Vra11g0758 968 MobiDBLite consensus disorder prediction 503 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0758 Vra-Chr11 6167165 6173843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0758 12 373 Miscellaneous Gene Families AT5G06670 43.243 1.10e-82 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0758 K11498 - gmx:100809766 1627.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1809 5 24095521 24102044 Vra11g0758 11 6167165 6173843 ECH
Vra11g0758 11 6167165 6173843 Vra11g0758 11 6167165 6173843 ECH
Vra11g0758 11 6167165 6173843 Vra7g0116 7 2089519 2096922 PCT