Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1809 ATGAGAGCTGTTACTGGAGAGGAGTTGGTTAAATGGGAGAAGATGGGAGGAATTGGAGGCCATGAAGAGAAGATTCTGGTGTTAGTGAGGCTGAGGCCTTTGAATCAGAAAGAAGTTGATGCGAATGAAGTAGCAGATTGGGAATGCATCAATGACAGTACCATCTTATACCGGAATACCCTTCGGGAAGGTTCTACATTCCCAAGCGCCTACACCTTCGACAGAGTATTTCGGGGTGACTGTTCCACAAAGCAGGTATATGAAGAAGGGGTCAAAGCAATTGCTCTTTCAGTTGTTGGTGGAATCAACTCAAGTATTTTTGCGTATGGGCAAACAAGTAGTGGAAAGACATATACGATGATTGGAGTAACTGAATATGCTGTTGCAGATATTTTTGACTATATAAGAAAGCATGAAGAAAGAGCATTTGTATTGAAGTTCTCAGCAATTGAAATTTACAACGAAAATATTAGGGACCTCCTCAGCAGTGAGAACACGCCACTAAGGCTGCGTGATGATCCTGAGAGAGGACCTATTATAGAGAAACTTATAGAAGAGACTCTGCGGGACTGGACGCATTTGAAAGAGCTTCTATCATTCTGTGAAGCACAGAGACAGGTAGGAGAGACATACCTCAATGACAAGAGTTCTCGATCTCACCAAATCATCAGACTGACAATTGAAAGTTCTGCCAGAGAATTCATGGGTAAAAGCAGCTCAACCACCCTAGCTGCTAGTGTGAATTTTGTTGATTTGGCAGGGAGTGAGCGTGCATCTCAGGCATTATCTGCTGGGTCCAGATTGAAAGAAGGCTGTCATATAAACCGGAGTTTACTCACTCTTGGAACAGTCATTCGTAAACTTAGTAAGGGAAGACAAGGACACATTAATTACAGAGATTCTAAGCTGACACGCATATTGCAGCCTTCCTTAGGTGGCAATTCTAGAACAGCCATCATTTGCACTTTGAGCCCCGCACGTTGTCATGTTGAGCAAACTAGAAACACCCTTCTTTTTGCCTGTTGTGCAAAACAAGTGACCACTAAAGCACAGGTTAATGTAGTGATGTCTGATAAAGTATTGGTCAAACAGTTGCAAAAAGAGGTAGCCAGATTAGAGAGTGAGTTGAGAACTCCTTGTCCACCTTCAACAAATTGTGATTGTGCAGCAATGATGAGAAAGAAAAATCTCCGAATAGAAAAGATGGAGAGGGAGATTCAGGAGCTAATTAAGCAACGTGATCTTGCTCAATCTCAGGTTGAGGATTTGCTGCGCATGGTTGGAAATGATCAGAAATCTAAAACGGAAAGGGTCGACACCTGGGAAGATGAAGATTCAATATCAGAATCATCAAGCATTTATCCTTCTGATTTACGGATTGGAGAATTCAACAATCCTCACTACATCAATGAAAACAGCGAAAGTAGTCCCGATAAACATCCTGATGAATACTGCAATGAAATTCAAAGTGTTGGATTGGAGGAATCGAGTAAGGATGGCTTGGAATATCCTGACCCATCAGTAAGATACAACGAGGTGTTGGCATTAACATGGTATGGAGATGAAAATGTAACAAGTCAGGAGATACTGACTCCTGTGGCTGAAGATAGGGAAGATAGACTGAACCAAGACGATGCAACAAATGATGTTTTGGAGCAGAGACTCGATGATGCAGAGTTGAGTAATGATTCTCCTCTGTCTATGTCAGGAACAGTGTCAAATTGTAGGAATCTTAAATTAACAAGGAGCTGGAGTTGTAGAGAATTCTACACGACTGGTTCTCCTGGGAATGTGGGAGAAATTGTGAGGACTCCGGCCAGTAGTTTTGAAAAATGCTTCCCTGGAAGACCAGATGGATTACCGAGAAAGTTCCTTCCATTAACTTATAGTGCTTCCACAAAATTGTCAATGAATGGCTCTCCGCCTTCAATTGGTACTCCGTCTACGGATGATTTAAGAACCAACAGCACAAGAACATCCACTAATGAAGATATTACTAGCCTCCAGACTTTTGTTGCAGGGATGAAGGAAATGGTCAAACTTGAGTATGAGAAGCGTCTTGTTGATGATGATCAGGATAAGGAGGCAGAGACAACATATTTTAGATTTGAAAAGAATATGAAGGATGTCGGAGTGGATTCAACGTTAGAGGCAGCTGGATCTCCTGAGGAGTGGCCTCTACAATTCAAACAGCAGCAGACAGAAATATTAGAACTTTGGGAAGCCTGCAATGTATCTTTGTTCCACAGGACTTACTTCTTTCTTTTGTTCAGGGGTGATCCGACAGACTCTATATACATGGAGGTGGAGCGAAGAAGATTATGTTTTCTGAAAGGAACATTTCATGGTGGAAATGAGTGGGTGAAAGATGCTCCGACAGTTACATTAGCGTCAAGTGCAAAGGGTGTGGAGAGGGAGAGAGAGACGCTGGTGAAGCTTATGAAGAGAAGGCTATCAGAGGAAGAGAGGAGGAAGGTGTTCAGGAAGTGGGGCATTGCATTGGATTCAAAGCGAAGGAGGAAGCAGCTGGCGAATCGCATATGGAGCAACACAGATATGAAGCATGTCATGGAGAGTGCTGCTGTTGTTGCAAAGTTAGTGAGGTTCACTTGGCAGGGTGATAATGCCCTTAAGGAGATGTTTGCCCTCAGCTTCTCACCTCATCGAATGTCATATTCCTCCAAAACTACCAGGGCCTCTCTTTTCTAG 2709 0.4286 MRAVTGEELVKWEKMGGIGGHEEKILVLVRLRPLNQKEVDANEVADWECINDSTILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGVKAIALSVVGGINSSIFAYGQTSSGKTYTMIGVTEYAVADIFDYIRKHEERAFVLKFSAIEIYNENIRDLLSSENTPLRLRDDPERGPIIEKLIEETLRDWTHLKELLSFCEAQRQVGETYLNDKSSRSHQIIRLTIESSAREFMGKSSSTTLAASVNFVDLAGSERASQALSAGSRLKEGCHINRSLLTLGTVIRKLSKGRQGHINYRDSKLTRILQPSLGGNSRTAIICTLSPARCHVEQTRNTLLFACCAKQVTTKAQVNVVMSDKVLVKQLQKEVARLESELRTPCPPSTNCDCAAMMRKKNLRIEKMEREIQELIKQRDLAQSQVEDLLRMVGNDQKSKTERVDTWEDEDSISESSSIYPSDLRIGEFNNPHYINENSESSPDKHPDEYCNEIQSVGLEESSKDGLEYPDPSVRYNEVLALTWYGDENVTSQEILTPVAEDREDRLNQDDATNDVLEQRLDDAELSNDSPLSMSGTVSNCRNLKLTRSWSCREFYTTGSPGNVGEIVRTPASSFEKCFPGRPDGLPRKFLPLTYSASTKLSMNGSPPSIGTPSTDDLRTNSTRTSTNEDITSLQTFVAGMKEMVKLEYEKRLVDDDQDKEAETTYFRFEKNMKDVGVDSTLEAAGSPEEWPLQFKQQQTEILELWEACNVSLFHRTYFFLLFRGDPTDSIYMEVERRRLCFLKGTFHGGNEWVKDAPTVTLASSAKGVERERETLVKLMKRRLSEEERRKVFRKWGIALDSKRRRKQLANRIWSNTDMKHVMESAAVVAKLVRFTWQGDNALKEMFALSFSPHRMSYSSKTTRASLF* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1809 902 Gene3D Kinesin motor domain 19 377 IPR036961 -
Vra5g1809 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 377 IPR027417 -
Vra5g1809 902 MobiDBLite consensus disorder prediction 635 661 - -
Vra5g1809 902 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1809 902 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1809 902 PRINTS Kinesin heavy chain signature 246 264 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1809 902 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1809 902 Coils Coil 355 375 - -
Vra5g1809 902 PANTHER CENTROMERE PROTEIN E 9 901 - -
Vra5g1809 902 Pfam Kinesin motor domain 30 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1809 902 ProSiteProfiles Kinesin motor domain profile. 24 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1809 902 CDD KISc_CENP_E 24 346 - -
Vra5g1809 902 Coils Coil 392 426 - -
Vra5g1809 902 Coils Coil 541 561 - -
Vra5g1809 902 ProSitePatterns Kinesin motor domain signature. 245 256 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra5g1809 902 Pfam Domain of unknown function (DUF3490) 728 887 IPR021881 -
Vra5g1809 902 MobiDBLite consensus disorder prediction 431 451 - -
Vra5g1809 902 SMART kinesin_4 22 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1809 902 PANTHER KINESIN-LIKE PROTEIN KIN-7F 9 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1809 Vra-Chr5 24095521 24102044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1809 22 376 Miscellaneous Gene Families AT5G06670 41.551 3.29e-75 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1809 K11498 - gmx:100813479 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1809 5 24095521 24102044 Vra5g1809 5 24095521 24102044 ECH
Vra5g1809 5 24095521 24102044 Vra11g0758 11 6167165 6173843 ECH