Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0116 ATGGGTTCCATTGCAGAGGAGGCAATGCAAGGCTCAGCAGGCAGTGAGGAGAGGATTCTTGTTTCTGTTCGTGTGAGACCTTTGAATGAAAAGGAGCTCTCAAGAAATGATCTGTCTGAATGGGAATGCATTAATGGCACAACCATCATTTACAGGAGCAACCTTTCAGCTACAGAAAGGTCCCTGTATCCAACAGCTTATACATTTGATCGAGTATTTAGTGTTGACAGCGACACAAGGCAGGTGTATGAAGAAGCAGCTAAGGAAGTTGCTCTTTCAGTTCTCGGTGGCATCAACTCAAGCATTTTTGCATATGGACAAACAAGCAGCGGAAAAACATACACCATGAGTGGTATAACAGAGTACGCTGTAGCAGATATTTTCAACTACATTGAAAAGCACACGGAAAGGGATTTTGTGTTGAGGTTTTCGGCACTGGAGATCTATAATGAATCTGTCAGGGATCTCCTAAGCGTTGACAGTACACCTCTCAGACTTCTTGATGATCCAGAGAAAGGGACAGTTGTTGAGAGACTCACGGAGGAAACTGTAAGGAACTGGAACCATTTTCAAGAACTCATTTTTTTCTGTGAAGCTCAAAGGCAAATAGGGGAGACAGCACTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTTAGACTGACAGTTGAAAGTTCTGCAAGTGAATTTATGGGAAATGGGAGCTCCCTTGCCGCTTCCGTGAATTTCGTCGATCTTGCTGGGAGTGAACGGGCATCCCAAACTAATTCAGCTGGTACTAGGTTGAAAGAGGGTTGCCACATTAATCGTAGTTTACTAACTCTAGGAACTGTCATCCGCAAACTGAGCAAGGGGAGAAATGGACATATTCCTTTCAGAGATTCAAAGCTAACCCGAATACTGCAGTCCTCGTTAGCAGGCAATGCTAAAACTGCAATCATCTGCACCATGAGCCCTGCAAGGAGCCATGTTGAACAAACCAGAAACACCCTTTTATTTGCTAGTTGTGCTAAAGAAGTGACAACCAATGCAAAAGTCAACGTAGTGATGTCTGATAAGTTGTTGGTCAAGCAACTGCAAAAAGAGTTGGCTAGACTGGAAAGTGAGTTGAAAAATTTAAGGCCAACGAAACCTGATACGTCAGCATTACTGAAGGAAAAAGATCTCCTAATTGAGATGTTAAAGAGAGAGGTAATGGATCTGAGAATGCAGCGGGACCTTGCTCAATCTCAAATTAAGGATATGATTCAAGTGGTTGGAGACGATAGGTCCTCCAGTGAATTGGACAGTTTAGGTCATCAGTATCCCAAATTACGTGTGCGAAATTCATTTGACTTTGAAAATCGAACTGTCGAGCTACCAAATTCGTTAAGTTTTGACTGCATTGAGAGTATCAGATCTTTTGATGCATCTCAATATTCAGATGGACATAGCATTAGTTCTGATGAGAACTATTTCCAACTCCCTGATTTGGAAAAGAGTCTTCCCGTCAGGATTTCTTCTCCTGCGCTTTCTGTTGAAAGTTTTGATGATGCAAGGAATGATTTGGATCAGAAAAGTGTTGAAGAACAGCACGAAGATAATTTAGAGGAACGTTGCAGGGAAGTTAGGCGCAATGGATCTGAAGACATAATTACAAACACCCATAAACATTCAAATTCAGCAGATATAAGTAAAATTTTATACACAGAGTCTGTTGCATCATCTCCAACCGTCTCAGGATTAACCGAAGTTGATAACAGAGACAAAGAAAATCCAGATTTGTGGTCAGCTGGTCTAAAGGACAACAAAGAAATAAACAGCTTAGAAGAACGTTTTGTTCTTCCCTCTCCACAGAAAATATCTCGATCACTGACACAAAGTGGTGCATCTAGTTCTAAAACTGTGAAATTAACCAGAAGTAGAAGTTGTAAAGCGACTCTCATGAGAGATACATCTTCAGATTGGTTTGACCAAGAAGAAATGATTCAGAATACAACCCCAATAGGAATCGAAAAAGACTTCACTGGAACACCGGAGGGCCCTCAGAAGAAGACTTCGACACTCAATTATAATGCCAAGGCTGAGAGGTTATCATCGGATGCTCACGAGAATTCCCTGGAAAGTACTGTAGATATACAGAATACAAAAACCTACATTGATAACGGAAGTTGTGACGATAATTCATTACCACCGGGAGAAAAGGAAAAAGATGATCTTGAAAGTTCAAATCTGCAAGCGAACCCCGAGGTTCCGGCGACTGATTTGCAGTCGGATAATGCTATAAAGAAGTTCAAAGATGTTGGTTTGGACCCATTGCAATCTGAGGAAGAAAAACAGATGGAATGGTCGTCAGAATTTAAGCGGCTGCAGAAAGAGATTATTGGACTCTGGCATGCTTGTCATGTTTCATTGGTTCACAGGACTTACTTTTTCCTTCTATTCAAAGGAGACCCATCGGATTCTATCTATATGGAAGTAGAGCTAAGAAGGCTGTTCTATCTCAAGCAAACTTTTGCCAAAGGGAATCAGACCGTGGAAGACGGATATATCCTTAACGCTGAAACAAGCCATAGGTATCTGAGAACTGAGAGACAGATGTTGAGCAAACAAATGGAGAAGAAGCTGTCAAAATCTGAAAGAGAAAACTTGTATATTAAATGGGGAATCAGTCTAAGTTCAAAGCATAGAAGGTTGCAGCTGTCCCATCGCCTGTGGTCAAGAACAGATGACATAGACCACATTAGAGAGAGTGCCACCATTGTTGCAAAGCTGGTTGGTTCAGTAGAGCCAGAGCAGGCTTTCAAGGAGATGTTTGGGCTCAATTTTGCCCCCCGAAGCACAAAAAGGAAATCTTTTGGTTGGACAGTTAGTATGAAGAATATTTTGTAA 2871 0.4159 MGSIAEEAMQGSAGSEERILVSVRVRPLNEKELSRNDLSEWECINGTTIIYRSNLSATERSLYPTAYTFDRVFSVDSDTRQVYEEAAKEVALSVLGGINSSIFAYGQTSSGKTYTMSGITEYAVADIFNYIEKHTERDFVLRFSALEIYNESVRDLLSVDSTPLRLLDDPEKGTVVERLTEETVRNWNHFQELIFFCEAQRQIGETALNEVSSRSHQILRLTVESSASEFMGNGSSLAASVNFVDLAGSERASQTNSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLAGNAKTAIICTMSPARSHVEQTRNTLLFASCAKEVTTNAKVNVVMSDKLLVKQLQKELARLESELKNLRPTKPDTSALLKEKDLLIEMLKREVMDLRMQRDLAQSQIKDMIQVVGDDRSSSELDSLGHQYPKLRVRNSFDFENRTVELPNSLSFDCIESIRSFDASQYSDGHSISSDENYFQLPDLEKSLPVRISSPALSVESFDDARNDLDQKSVEEQHEDNLEERCREVRRNGSEDIITNTHKHSNSADISKILYTESVASSPTVSGLTEVDNRDKENPDLWSAGLKDNKEINSLEERFVLPSPQKISRSLTQSGASSSKTVKLTRSRSCKATLMRDTSSDWFDQEEMIQNTTPIGIEKDFTGTPEGPQKKTSTLNYNAKAERLSSDAHENSLESTVDIQNTKTYIDNGSCDDNSLPPGEKEKDDLESSNLQANPEVPATDLQSDNAIKKFKDVGLDPLQSEEEKQMEWSSEFKRLQKEIIGLWHACHVSLVHRTYFFLLFKGDPSDSIYMEVELRRLFYLKQTFAKGNQTVEDGYILNAETSHRYLRTERQMLSKQMEKKLSKSERENLYIKWGISLSSKHRRLQLSHRLWSRTDDIDHIRESATIVAKLVGSVEPEQAFKEMFGLNFAPRSTKRKSFGWTVSMKNIL* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0116 956 PANTHER CENTROMERE PROTEIN E 5 956 - -
Vra7g0116 956 CDD KISc_CENP_E 19 340 - -
Vra7g0116 956 Coils Coil 349 376 - -
Vra7g0116 956 MobiDBLite consensus disorder prediction 711 736 - -
Vra7g0116 956 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g0116 956 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g0116 956 PRINTS Kinesin heavy chain signature 240 258 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g0116 956 PRINTS Kinesin heavy chain signature 290 311 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g0116 956 Pfam Domain of unknown function (DUF3490) 779 938 IPR021881 -
Vra7g0116 956 Gene3D Kinesin motor domain 9 371 IPR036961 -
Vra7g0116 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 374 IPR027417 -
Vra7g0116 956 Coils Coil 384 411 - -
Vra7g0116 956 Pfam Kinesin motor domain 24 340 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g0116 956 Coils Coil 766 786 - -
Vra7g0116 956 SMART kinesin_4 16 348 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g0116 956 Coils Coil 519 539 - -
Vra7g0116 956 ProSitePatterns Kinesin motor domain signature. 239 250 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra7g0116 956 ProSiteProfiles Kinesin motor domain profile. 18 340 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra7g0116 956 PANTHER ATP-BINDING MICROTUBULE MOTOR FAMILY PROTEIN 5 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0116 Vra-Chr7 2089519 2096922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0116 15 398 Miscellaneous Gene Families AT5G06670 42.494 7.08e-85 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0116 K11498 - gmx:100775190 1479.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0758 11 6167165 6173843 Vra7g0116 7 2089519 2096922 PCT