Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0267 ATGGATTCCCCACAATCTGTTGTATCACCCTTCAGAAGCTCAGTTTTGGGTGAGGGTGAGAAGCACAAGTCTGAAGTTTTCTCGGGAAACTCTAGTCCCTTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGTTATCATGTCAAATGTAGAGGAGTGTCTTGGAGTTCTTGATGTTTACATACATCAGGCAAGGGACATTCAGAACATTTGCATATACCACAAGCAAGATGTTTACGCTAGGATATGCCTGACCAGTAATCCTGAGAACACCGTGTCTACCAAAACCATCAATGGAGGAGGAAGGAACCCTGTGTTTAATGAGAATCTTCAAGTCAATATTAAAACTGTTGATGCTTCTCTCAAGTGTGAGATATGGATGCTTAGCAGGGTGAAGAATTATCTTGAGGACCAGCTGCTTGGTTTTGCCTTGGTGCCTTTGTCTGAAGTTCTAGTCCAGAATGGGAAACTGGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTATTCCATTCTCCTTCAGGTTTTGTTCAGTTGACACTGTCTTACAATGGTGCTTCACCTGATGTTATGGCAATTTCTGCAATACCAAGCAAGGTGGCCACAGATGCCCCTGTGCAGGATTCGGAAACATCCGAATCACTGGCCCGAGAATTTGACAAAATTGAGTTCCCGGATCCGAAGATTGTGAATGAAGACCACTTGATGGTTTCAGAATACTTTGGCATTCCATGTGAGGAGACTAGGTGCTCTGATAGCCTGGCTACTTCTGATGCCGAAAATCGCAGTTGCGAAGCCGGTGTTCGCCTTGTGGAAAGCTTCTCAGCATGCAGTGGTGAGTCTTTTCAGCCACCTAAGGTTGATTCCCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCCCCTTCTGTGCCTGCAAGCTCAGAATCATCTGATGCTGCTGCTTCGAAGTCTCCTATTCAGGAGCAGGCTTCAGGCACCAAAGAGGGAAAAAATGTGGATGTGAAAGATGGTGACAGTGATTCCTCAAGTGGGGTTCCTAATGACTCATTCCCTAAGCCTGTTGTCACTGTGAGCATTGAGCCTGAGCCTAAGGTGGTGCAGCAGGATATAGTGGACATGTACATGAAAAGCATGCAGCAATTTACTGAGTCACTTGCAAAAATGAAGCTCCCTATGGACTTCGAAAGTGAACCAACTAGTTCAGGAAATTCAACCACTGAGCAAAAGCTACAGCCATCAAAGAGCAACAATTCCCGTGTGTTTTATGGTAGCAGAGCTTTCTTCTGA 1287 0.4522 MDSPQSVVSPFRSSVLGEGEKHKSEVFSGNSSPLSKDIEVNGKEVIMSNVEECLGVLDVYIHQARDIQNICIYHKQDVYARICLTSNPENTVSTKTINGGGRNPVFNENLQVNIKTVDASLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLTLSYNGASPDVMAISAIPSKVATDAPVQDSETSESLAREFDKIEFPDPKIVNEDHLMVSEYFGIPCEETRCSDSLATSDAENRSCEAGVRLVESFSACSGESFQPPKVDSPPSSVSTNGVSSPSVPASSESSDAAASKSPIQEQASGTKEGKNVDVKDGDSDSSSGVPNDSFPKPVVTVSIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESEPTSSGNSTTEQKLQPSKSNNSRVFYGSRAFF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0267 428 MobiDBLite consensus disorder prediction 278 356 - -
Vra10g0267 428 Pfam C2 domain 55 162 IPR000008 -
Vra10g0267 428 CDD C2 57 163 - -
Vra10g0267 428 MobiDBLite consensus disorder prediction 396 422 - -
Vra10g0267 428 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Vra10g0267 428 SMART C2_3c 56 159 IPR000008 -
Vra10g0267 428 Gene3D C2 domain 51 199 IPR035892 -
Vra10g0267 428 MobiDBLite consensus disorder prediction 278 327 - -
Vra10g0267 428 PANTHER EXPRESSED PROTEIN 1 428 - -
Vra10g0267 428 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 428 - -
Vra10g0267 428 MobiDBLite consensus disorder prediction 392 428 - -
Vra10g0267 428 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 184 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0267 Vra-Chr10 7066689 7069216 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0267 - - gmx:100796499 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0267 10 7066689 7069216 Vra6g0361 6 2783426 2785737 PCT
Vra10g0267 10 7066689 7069216 Vra6g0167 6 1220600 1223547 PCT