Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0167 ATGGAATCCCCACAGTCTGTTGTGTCACCATTCAAGAACTCTGTCTTGGGTGAGGCTGAGAAGTACAAGTCTGATATTTACAAGCAAAGCTCGGGTCCTTTCTCTAAGGACATTGAAGTAAACGGAAAGGAAGCTGTCAGGTCCAATTCAGAGGACTTCATTGGTGCTGTTGATGTTTACATTCATCAGGCCAGGGACATTCATAACATCTGCATATACCACAAGCAAGATGTTTATGCTAAAATTAGCCTGACTAGTAATCCCGAGAATACCGTCTCTACCAAGACCATCAATGGAGGAGGAAGGAACCCTGTCTTTAATGAGAATCTTCGTCTAAGCGTTAGGACAGTTGATTCTGCTGTAAAGTGTGAAATCTGGATGCTGAGCAGGGTGAAGAATTATCTTGAAGATCAATTGCTTGGCTTTGCTTTGGTGCCTTTGTCAGAAGTGCTGATGAAGGACGGCAAACTAGAGAAAGAGTTCTCTCTTTCCTCAACTGATCTATTCCATTCACCGGCCGGTTTTGTGCAGTTGTCTCTCGCCTACACTGGCACTTCGCCTGATGTTATTGCAATTTCTGCAATGCCTACTGAGTTGGCTGCAAATGGCACTGACAAGGACTCTGAAAATTGCGAATCACTGGTCAGAGATTTAGACAAGATTGAATTCCCGGATCCAAAAATTGTAAATGAAGACCACTTGATGGTTTCAGAATACTTCGGTATTCCATGTGAGGAGAGTCAGTGTTCTGGTAGCTTGACCACTAATGATACTGAAAATCTGAGTCCTGAAGCAGGTGTTCAGCTTGTGGAGAGCTTCTCAGCATGCAGTGTTGAGTCTGCACAACCTCCTAAGGTTGATTCTCCACCTACAAGTGTGTCAACAAATGGAGTTTCATCTCCTTCAGTGGCTGTAAGCTCAGACTCATCTGATACTGCTGCTGCTGTTGTTGCTGCTTCCAAGTCTCCAAATCAGGAACAAGTTTCGGCCAACAAAGAGAAAAATGGTGAGACTGATTCCTCAAATGGGGTGGTGAACGAGTCATTCCCTAAGCCTGTTGTGACCGTTAACATCGAGCCTGAGTCAAATGTGGTGCAGCAGGACATTGTAGACATGTACATGAAAAGCATGCAGCAGTTCACAGAGTCTTTGGCGAAAATGAAGCTTCCTATGGACTTTGAAAGTGGACCAACTAGTTCAGGAAACTCAAGCTCCGAACAGAAGATACAGACACCAAAGAGCTCCAACTCCCGTGTGTTTTACGGCAGCAGGGCTTTCTTCTGA 1284 0.447 MESPQSVVSPFKNSVLGEAEKYKSDIYKQSSGPFSKDIEVNGKEAVRSNSEDFIGAVDVYIHQARDIHNICIYHKQDVYAKISLTSNPENTVSTKTINGGGRNPVFNENLRLSVRTVDSAVKCEIWMLSRVKNYLEDQLLGFALVPLSEVLMKDGKLEKEFSLSSTDLFHSPAGFVQLSLAYTGTSPDVIAISAMPTELAANGTDKDSENCESLVRDLDKIEFPDPKIVNEDHLMVSEYFGIPCEESQCSGSLTTNDTENLSPEAGVQLVESFSACSVESAQPPKVDSPPTSVSTNGVSSPSVAVSSDSSDTAAAVVAASKSPNQEQVSANKEKNGETDSSNGVVNESFPKPVVTVNIEPESNVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQKIQTPKSSNSRVFYGSRAFF* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0167 427 Gene3D C2 domain 51 198 IPR035892 -
Vra6g0167 427 MobiDBLite consensus disorder prediction 280 348 - -
Vra6g0167 427 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 185 IPR035892 -
Vra6g0167 427 Pfam C2 domain 56 161 IPR000008 -
Vra6g0167 427 PANTHER EXPRESSED PROTEIN 1 427 - -
Vra6g0167 427 SMART C2_3c 56 159 IPR000008 -
Vra6g0167 427 MobiDBLite consensus disorder prediction 391 417 - -
Vra6g0167 427 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Vra6g0167 427 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 427 - -
Vra6g0167 427 MobiDBLite consensus disorder prediction 395 417 - -
Vra6g0167 427 CDD C2 57 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0167 Vra-Chr6 1220600 1223547 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0167 - - gmx:100781587 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0167 6 1220600 1223547 Vra6g0167 6 1220600 1223547 ECH
Vra10g0267 10 7066689 7069216 Vra6g0167 6 1220600 1223547 PCT