Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0361 ATGGATTCATTCAATCAGAATTGTCAGAACAGCAGCTTCAGGTACAGTCCAAATTTGAACACAGGGACACATGCTGATGAAGAAGCTGAATTCTCAGGGATTCTTGATATCTTTGTCCATCATGCCAGGAATATTCATAACATATGCATCTATGACAACCAGGATGTGTATGCCAAGTTCTCTCTAACTTACAACCCTGATGAGACCCTCTCTACCAGAATCATCAATGGAGGTGGCAAAAACCCAACATTCAATGAAAACATGAGGATGAAGATTAGACAAATAGACGCTGTTCTGAAATGTGAAATTTGGATGTTTAGCAGGGCAAGGATTCACATGGAAGACCAGCTATTGGGATTTGCTTTGGTCCCAATTTCACAAGTCATTGGCAAAGGAAAGGTAACCGAAGATTACAGCCTTTCTTCCACTGATCTTTTCCACTCTCCTGCTGGAACCGTTCAACTCACACTGGCTTTAGACCCCTCTTTGGCACTCGATTCCTCAGTGAATTTGATACCTGAATCGGCAAAGACTTCATCCATATCATCAGAAGTCATCTTGCTTGATAGAAAGATCTCAGAAGTTATGTTGGACCCAGTTGAGTATGCAAGAATTGAATTTCCTGACATCAGTGTTGTGAAGGAGAACCAGCAAATGGTGTCCGAGTACTTCAATCTTGCAGCTCATGGTACTTGTTCTGCTCCTTCAAGGTCCAACATTGGAAGATCTCTACCATTTCTCCACCTTGGTGCATGTCCTCAACTTGATGATTACGAGATGACTATGAGTCCCCCAGATGAGAATCATGTAGGCTCCCTTTCTCCAAACGAGAGCATTCAGAATTCATGCTTCCTAGGCTCCACTATCACAACCTTGAGTGATGATAGAAACTCAGCAGATTCAGTTGAGAAAAAGAACCCCTTGAGCACTGGTGACTCCTCCAATTCTGTCACTGTGTCAATCACTGTGGAAGGTAGTCAAAACTCTGGTGGTGCTTGTCCAGATACCCCAACTTCTAAGAAAGAAGGTGAGACCCCAAATGAAAAAGATGCAACCTTCTCAAGCAACGAAAAGGAAAGCAAAATCACCAATAAGAACACAACAGAAGCTTCAACGTTTGGTCAAGTTTTTTCGGCTCCATTAGGGAACATCAATCTTGAGGCCGAGCAAGCTGCTATGCAAAAACAGATAGTGGACATGTATATGAGGAGCATGCAGCAGTTCACTGAGTCCTTGGCAAAAATGAAGCTCCCCATGGACCTTGACAAGCCTGAAAAAGTTGATCATGGCGATGGTGATGTGATTCAGAATCATGAAAACAGCAAATTAGAAACTGATAACAAGAAAAAGGATGGATCTCGTGTGTTTTATGGTAGTCGAGCATTCTTCTAA 1392 0.4253 MDSFNQNCQNSSFRYSPNLNTGTHADEEAEFSGILDIFVHHARNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINGGGKNPTFNENMRMKIRQIDAVLKCEIWMFSRARIHMEDQLLGFALVPISQVIGKGKVTEDYSLSSTDLFHSPAGTVQLTLALDPSLALDSSVNLIPESAKTSSISSEVILLDRKISEVMLDPVEYARIEFPDISVVKENQQMVSEYFNLAAHGTCSAPSRSNIGRSLPFLHLGACPQLDDYEMTMSPPDENHVGSLSPNESIQNSCFLGSTITTLSDDRNSADSVEKKNPLSTGDSSNSVTVSITVEGSQNSGGACPDTPTSKKEGETPNEKDATFSSNEKESKITNKNTTEASTFGQVFSAPLGNINLEAEQAAMQKQIVDMYMRSMQQFTESLAKMKLPMDLDKPEKVDHGDGDVIQNHENSKLETDNKKKDGSRVFYGSRAFF* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0361 463 PANTHER EXPRESSED PROTEIN 1 463 - -
Vra6g0361 463 Pfam C2 domain 33 138 IPR000008 -
Vra6g0361 463 MobiDBLite consensus disorder prediction 293 367 - -
Vra6g0361 463 ProSiteProfiles C2 domain profile. 15 138 IPR000008 -
Vra6g0361 463 MobiDBLite consensus disorder prediction 303 335 - -
Vra6g0361 463 MobiDBLite consensus disorder prediction 341 356 - -
Vra6g0361 463 Gene3D C2 domain 31 167 IPR035892 -
Vra6g0361 463 MobiDBLite consensus disorder prediction 422 451 - -
Vra6g0361 463 PANTHER OS01G0953500 PROTEIN 1 463 - -
Vra6g0361 463 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 32 161 IPR035892 -
Vra6g0361 463 SMART C2_3c 34 137 IPR000008 -
Vra6g0361 463 CDD C2 35 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0361 Vra-Chr6 2783426 2785737 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0361 - - gmx:100818818 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0361 6 2783426 2785737 Vra6g0361 6 2783426 2785737 ECH
Vra10g0267 10 7066689 7069216 Vra6g0361 6 2783426 2785737 PCT