Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04494 ATGGGGGAACCAACAGAAAAGTATGCAGTGGTGACTGGATCAAACAAAGGAATTGGATTTGAAATAGTTAAGCAGTTAGCTTCATCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGAACAAAGAGGTCTTCAAGCTTTGGAAACACTCAAAGCATCTGGTTTATCTGACTTTGTTGTTTTTCATCAACTAGATGTTGCTGATGCTGCAAGTATAGCCACTCTTGCAGATTTTATCAAATCACAATTTGGAAAACTAGATATTCTGGTTAACAATGCTGGGGTTGGTGGAATTGATATTAAAGATAGTAACTTATATAGTTCATTAATCATTACGAACGGGTTGGCACTATCTAATGAGGAATTGAGAAGGACAATGACAGAATCGTACGAGTCAGCTAAAGAATGCTTAGAGATAAATTATCGCGGTGCTAAGCGAACATTTGAATGTCTTCTTCCCCTACTCCAGTTATCAGATTCACCAAGAGTAGTCAATGTATCATCAGGATTGGGAAAGATAGAGTATGTATCAAATGAATGGGCAAAAGGGGTTTTCAGTGATGTTGAAAACCTTACAGAAGAGAGAATAGATGAAGTGTCAAAGGAGTTTATCAAGGATTTTGAAGAAGGGTCTTTGGAAAGAAAAGGTTGGCCTAGGTATTTGGCTGCTTATACTGTTGCTAAAGTTTCAATGAATGCTTATACAAGAATTATTGCGAAAAAATATCCAAATTTTTGCATCAATTGTGTTTGTCCTGGTTATGTGAAGACTGATATAACTGCTAATACTGGTTTCTACACTGCAAAAGAAGGTGCTGCTCATCCTGTTAGATTAGCATTGCTTCCCAATGGTAGTCCATCTGGTCTATACTATACTCGAGATATACTCTCGGCATTTTGA 900 0.3733 MGEPTEKYAVVTGSNKGIGFEIVKQLASSGIKVVLTARDEQRGLQALETLKASGLSDFVVFHQLDVADAASIATLADFIKSQFGKLDILVNNAGVGGIDIKDSNLYSSLIITNGLALSNEELRRTMTESYESAKECLEINYRGAKRTFECLLPLLQLSDSPRVVNVSSGLGKIEYVSNEWAKGVFSDVENLTEERIDEVSKEFIKDFEEGSLERKGWPRYLAAYTVAKVSMNAYTRIIAKKYPNFCINCVCPGYVKTDITANTGFYTAKEGAAHPVRLALLPNGSPSGLYYTRDILSAF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04494 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Vivi7g04494 299 Gene3D - 3 299 - -
Vivi7g04494 299 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 211 239 IPR020904 GO:0016491
Vivi7g04494 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vivi7g04494 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Vivi7g04494 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Vivi7g04494 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 293 - -
Vivi7g04494 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vivi7g04494 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vivi7g04494 299 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Vivi7g04494 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Vivi7g04494 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Vivi7g04494 299 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
Vivi7g04494 299 Pfam short chain dehydrogenase 7 176 IPR002347 -
Vivi7g04494 299 FunFam (+)-neomenthol dehydrogenase 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04494 Vivi-Chr7 115474538 115476124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04494 9 174 Miscellaneous Gene Families AT2G29150 32.934 7.08e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04494 K15095 - gmx:102663482 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04494 7 115474538 115476124 Vivi7g04494 7 115474538 115476124 ECH
Vivi7g04491 7 115465540 115467491 Vivi7g04494 7 115474538 115476124 PCT
Vivi7g04494 7 115474538 115476124 Vivi7g04489 7 115409221 115410714 PCT