Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04492 ATGGGAGAACCAACGGAAAGGTATGCGGTTGTGACTGGATCAAACAAAGGAATTGGATTTGAGATAGTTAAGCAGTTAGCTGAAGCTGGAATCAAAGTGGTGCTTACAGCAAGAGATGAGAAAAGAGGTCTTCAAGCTTTGGAAACACTCAAGGCTTCTGGTTTATCTGATTTTGTTGTTTTTCATCAACTAGATGTGGCAAATGCTGCAAGTGTGGCTACTCTTGCAGATTTTATCAAATCGCGATTTGGAAAACTTGATATTCTGGTTAACAATGCAGGGATTAGTGGAACTGTGATTAATGACAAAGATTTAGCTACCGTGCTTATCTCTAACCCTGGAGCATTATCAGAAGATGAAAAGAAAATGGCAGTGACTCAAACATATGAGTTAGCTGAAGAATGCTTGAAAATAAATTATTATGGTACTAAAATAACTACTGAATCTCTTCTGCCGCTGCTAAAGTTATCCGATTCACCAAGAATCGTAAATGTATCGTCCACTCTAGGGAAGTTAGAGCACATACAAAATGAATGGACTCAAAAAGTCTTCAGTGATGCTGATAACCTAACCGAAGAGAAAGTGGATGAAGTACTAAAGAAGTTTCTTGAAGATTTCAAAAAAGAGGGGCCTAAACCTGGCGGTGCTTATGTCATATCTAAAGCTGCTGTCAATGCTTATACAAGAATTGCTGCTAAGAATTTTCCTACTGTAAGCATCAATAGTGTTTGCCCTGGTTATGTCATCACTGATATAACTGCAAATACCGGTATCTTAACCGCTGAAGAAGGTGCTGCTAGTGTTGTCAAGCTCGCACTACTTCCCAATGGTAGTTCGTCTGGCCAATTCTATAGCAGGACCGAAGTGTCAGCCTTTTGA 879 0.3959 MGEPTERYAVVTGSNKGIGFEIVKQLAEAGIKVVLTARDEKRGLQALETLKASGLSDFVVFHQLDVANAASVATLADFIKSRFGKLDILVNNAGISGTVINDKDLATVLISNPGALSEDEKKMAVTQTYELAEECLKINYYGTKITTESLLPLLKLSDSPRIVNVSSTLGKLEHIQNEWTQKVFSDADNLTEEKVDEVLKKFLEDFKKEGPKPGGAYVISKAAVNAYTRIAAKNFPTVSINSVCPGYVITDITANTGILTAEEGAASVVKLALLPNGSSSGQFYSRTEVSAF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04492 292 CDD carb_red_PTCR-like_SDR_c 7 292 IPR045313 GO:0016616
Vivi7g04492 292 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 290 - -
Vivi7g04492 292 Pfam short chain dehydrogenase 8 173 IPR002347 -
Vivi7g04492 292 Gene3D - 3 292 - -
Vivi7g04492 292 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Vivi7g04492 292 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vivi7g04492 292 PRINTS Glucose/ribitol dehydrogenase family signature 236 253 IPR002347 -
Vivi7g04492 292 PRINTS Glucose/ribitol dehydrogenase family signature 217 236 IPR002347 -
Vivi7g04492 292 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vivi7g04492 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vivi7g04492 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vivi7g04492 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 217 236 IPR002347 -
Vivi7g04492 292 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 282 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04492 Vivi-Chr7 115467867 115471391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04492 3 253 Acyl Lipid Metabolism Gene Families AT3G55290 26.718 1.40e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04492 K15095 - gmx:102663482 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04492 7 115467867 115471391 Vivi7g04492 7 115467867 115471391 ECH
Vivi7g04489 7 115409221 115410714 Vivi7g04492 7 115467867 115471391 PCT
Vivi7g04492 7 115467867 115471391 Vivi7g04487 7 115398528 115400942 PCT