Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04487 ATGGCAGAAACAACAAAAAGGTATGCAGTTGTTACAGGGGCAAACAAAGGAATAGGATTTGCAGTATGCAAACAATTGGCTTCTATAGGGATCACTGTTGTGCTTACTGCAAGAGATGAAAATAGAGGTCTTGAAGCTGTTGAGAAATTGAAGCAGCTTTCTCTTCCTGGCCTTGTGGTTTTTCATCAACTTGATGTCACAGATCATGCAAGTATAACATCATTTGCAGATTTTATCAAGAATCAATTTGGAAAACTTGATATTTTGGTAAACAATGCTGGAATTCCTGGGGTTCAAGCAGACAGTGAGGCTCTGGCTGCTGTTAATTTTTCCGAAAATGGTGGCCAGATTGATTGGAGCAAAATAATAATCGAAAACTATGAACAAACTGAAGCAGGTATTAAAACAAACTACTATGGAGCCAAGGAATTAACCGAAGCACTTATTCCCTTTCTACAACTTTCAACTTCACCCATAATTGTCAATGTTTCCTCATTCATGGGAAGCTTAGAGAATATTCCAAATGGATGGCCTAAGGAAGTACTCGGTGATGTTGAAAACCTTAATGAAAAAAAGATTGATGATTTTTTGAATCAATTTCTAAAGGATTTTGAAGAAGGTTCAATAGTAGAAAGCAAAGGATGGCCTATAAATATGTCTACATACGTTATCTCGAAAGCTGCTCTAAGTGCGTACACAAGAGTTCTGGCTAAAAAGTATTCATCAATATGCATCAATGCTGTTTGTCCGGGCTATGTGAAAACAGATATAAACTACAATACAGGTTATTTAACACCTGATGAAGGTGCTGAACCGATTGTGAGATTGGCATTGTTACCAGATGGAAGTCCTTCTGGGCTCTTTTTTGTTAGAAATGAAGAGAAACCATTTTGA 894 0.3714 MAETTKRYAVVTGANKGIGFAVCKQLASIGITVVLTARDENRGLEAVEKLKQLSLPGLVVFHQLDVTDHASITSFADFIKNQFGKLDILVNNAGIPGVQADSEALAAVNFSENGGQIDWSKIIIENYEQTEAGIKTNYYGAKELTEALIPFLQLSTSPIIVNVSSFMGSLENIPNGWPKEVLGDVENLNEKKIDDFLNQFLKDFEEGSIVESKGWPINMSTYVISKAALSAYTRVLAKKYSSICINAVCPGYVKTDINYNTGYLTPDEGAEPIVRLALLPDGSPSGLFFVRNEEKPF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04487 297 CDD carb_red_PTCR-like_SDR_c 7 297 IPR045313 GO:0016616
Vivi7g04487 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 222 241 IPR002347 -
Vivi7g04487 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vivi7g04487 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Vivi7g04487 297 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 209 237 IPR020904 GO:0016491
Vivi7g04487 297 Pfam Enoyl-(Acyl carrier protein) reductase 208 260 - -
Vivi7g04487 297 FunFam (+)-neomenthol dehydrogenase 2 297 - -
Vivi7g04487 297 Pfam short chain dehydrogenase 8 170 IPR002347 -
Vivi7g04487 297 PRINTS Glucose/ribitol dehydrogenase family signature 241 258 IPR002347 -
Vivi7g04487 297 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vivi7g04487 297 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vivi7g04487 297 PRINTS Glucose/ribitol dehydrogenase family signature 222 241 IPR002347 -
Vivi7g04487 297 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 295 - -
Vivi7g04487 297 Gene3D - 2 297 - -
Vivi7g04487 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 283 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04487 Vivi-Chr7 115398528 115400942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04487 9 293 Miscellaneous Gene Families AT2G29150 25.952 6.58e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04487 K15095 - gmx:100803877 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04487 7 115398528 115400942 Vivi7g04487 7 115398528 115400942 ECH
Vivi7g04487 7 115398528 115400942 Vivi7g04490 7 115410965 115422079 PCT
Vivi7g04492 7 115467867 115471391 Vivi7g04487 7 115398528 115400942 PCT