Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi5g06175 | ATGGTTCTTCCAGTGATAATTTTCGACTTCGATCGAACCATTATCGACGACGACAGTGACAGATGGGTCATCAACCAAACAGGTCTCACCGACCTCTTCAACCAACTCCGAACCACCCTTCCATGGACCTCTCTCATGGACACAATCATGCAACAGCTCCACTCCAAAGGAATCACCACCAACAACATCAAACAATGTCTCAAAACCGCTTTCTTGCATCCAAACATCGTTTCCGCCATCAAATCTGCACAATCTCTAGGATGTGATTTGAGGATTGTTAGTGATGCTAATTTGTTTTATATTCAGACTATTCTTGAACACCATGGTATTTTAGGGTGTTTTTCGGAAATTTATACGAATCCGACATTTGTTGATGAAAAGGGTTGTCTTCATGTTACTCCGTTTCATGATTCGTTGTCATTGCCTCCTCATGATTGTCACCTTTGCCCTCCCAATATGTGCAAGGGTTTGGTAATAGACAGAATACGCGCTTCATTAGCTGAAACCGAAACAAGATTCATCTACCTTGGAGATGGGACAGGTGATTATTGCCCGACTTTGAAGCTTAGGGAAGATGATTTTGTAATGCCTAGGAAGAATTATCCCTTATGGAACAGGATTTGCAGTGATCCAAAACTAGTTCATGCAAAAGTTCATGATTGGAGCAGTGGGGAGGAGTTGGAGAACATCTTACTCAACCTGGTCAAAAAAATTAGTCACGTAGCTTAA | 729 | 0.4184 | MVLPVIIFDFDRTIIDDDSDRWVINQTGLTDLFNQLRTTLPWTSLMDTIMQQLHSKGITTNNIKQCLKTAFLHPNIVSAIKSAQSLGCDLRIVSDANLFYIQTILEHHGILGCFSEIYTNPTFVDEKGCLHVTPFHDSLSLPPHDCHLCPPNMCKGLVIDRIRASLAETETRFIYLGDGTGDYCPTLKLREDDFVMPRKNYPLWNRICSDPKLVHAKVHDWSSGEELENILLNLVKKISHVA | 242 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi5g06175 | 242 | Gene3D | - | 3 | 189 | IPR023214 | - | |
| Vivi5g06175 | 242 | PIRSF | PLP_phosphatas_PHOSPHO2 | 2 | 239 | IPR016965 | GO:0016791 | |
| Vivi5g06175 | 242 | Pfam | Putative Phosphatase | 5 | 235 | IPR016965 | GO:0016791 | |
| Vivi5g06175 | 242 | NCBIfam | MtnX-like HAD-IB family phosphatase | 4 | 199 | IPR006384 | GO:0016791 | |
| Vivi5g06175 | 242 | NCBIfam | HAD-IB family phosphatase | 5 | 187 | - | - | |
| Vivi5g06175 | 242 | SUPERFAMILY | HAD-like | 5 | 185 | IPR036412 | - | |
| Vivi5g06175 | 242 | PANTHER | PHOSPHATASE, ORPHAN 1, 2 | 5 | 239 | IPR016965 | GO:0016791 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi5g06175 | Vivi-Chr5 | 167543353 | 167545295 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi5g06175 | K13248 | - | rcu:8265082 | 325.479 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vivi5g06175 | 5 | 167543353 | 167545295 | Vivi7g03729 | 7 | 103237944 | 103239321 | ECH | |
| Vivi5g06175 | 5 | 167543353 | 167545295 | Vivi2g08016 | 2 | 230224577 | 230225629 | ECH | |
| Vivi5g06175 | 5 | 167543353 | 167545295 | Vivi5g06175 | 5 | 167543353 | 167545295 | ECH |