Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g00952 ATGGCTCCTTCTTCTTCATCTTCTTCTTTAACAATCTCTCCAAGGAAGCTACACTATGATTTATATTCCTACTCATACAAACAAGATTCAAACACACCATTAGTGATAAATGTTCTAGCTTCATTAATTGAGAGAACCATGGCAAGAACACAAAGAATTGTGAAGAATTGTTCTAAGGTTTTGTCCAAAGAATTTACCACAAAGATCTTTGATTGTAGAGAGGTTCCTGATTTGACTATTGAATCTTATTTAGAGAGGATTTTTAGGTACACACGTGCTGGACCTTCGGTTTATGTTGTTGCTTATGTGTATATTGATAGGTTTTGTCAAAGTAATGTTGGATTTAGAATCAATTCAAGAAATGTTCATAGACTTCTCATAACTACTATTATGGTGGCTTCTAAGTATGTTGAAGATATGAATTTCAGAAACTCATACTTTGCAAAAGTTGGTGGATTAACAACAAATGAATTGAATGAGTTAGAGCTTGAATTTCTATTCATGATGAATTTCAAATTACATGTAAATGTGAGTGTATTTGAGAGCTATTGTTGCCATTTAGAGAGAGAAGTAAGCATTGGAGGAGGGTACCATATTGAGAGGACCTTAAGATGTGCTGAAGAAATCAAAGAAAAGGGACACACACAAATTGCACGAGTAATGTTGTAG 669 0.3378 MAPSSSSSSLTISPRKLHYDLYSYSYKQDSNTPLVINVLASLIERTMARTQRIVKNCSKVLSKEFTTKIFDCREVPDLTIESYLERIFRYTRAGPSVYVVAYVYIDRFCQSNVGFRINSRNVHRLLITTIMVASKYVEDMNFRNSYFAKVGGLTTNELNELELEFLFMMNFKLHVNVSVFESYCCHLEREVSIGGGYHIERTLRCAEEIKEKGHTQIARVML 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g00952 222 Pfam Cyclin 62 173 IPR013922 GO:0000079|GO:0019901
Vivi5g00952 222 Gene3D - 23 216 - -
Vivi5g00952 222 PIRSF PREG 9 221 IPR012389 -
Vivi5g00952 222 SUPERFAMILY Cyclin-like 83 174 IPR036915 -
Vivi5g00952 222 PANTHER UNCHARACTERIZED 22 204 IPR013922 GO:0000079|GO:0019901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g00952 Vivi-Chr5 21914195 21915812 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g00952 - - gmx:100775375 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01317 6 52848073 52849869 Vivi5g00952 5 21914195 21915812 PCT
Vivi5g00952 5 21914195 21915812 Vivi6g02323 6 102401815 102402989 PCT