Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02323 ATGGGTGTTATGTCTGAGAAACCCCTTCAAGAACTTCCTATGCATTCTACAGACACCACATTTTCTCCTCCTTCATCTAAAAGGTTGGAAGGAAAAATTGCTATTGTAACCGGAGGAGCTAGAGGAATTGGAGAAGCCACGGTGAGAATTTTTGTGAAGCATGGTGCAAAAGTAGTAATTGCTGATGTTGAAGATGAACTTGGAACAATCCTTGCAAATTCACTCTCTCCTTCAACTAACTACATCCATTGTGATGTTAGCATTGAAAAAGATGTTGAAAATTTAGTCACATCAACCGTTTCGCACTACGGTAAACTCGACATCATGTTCAACAATGCAGGCGTTCTTGGAAACCAGTCCAAGAACAAAAGCATTGTGAACTTCGACCCGGACGAGTTTGACCGAGTCATGAGTGTTAATGTTAAAGGAGTAGCTTTAGGGATGAAACATGCAGCAAGAGTGATGATTCCTAGAGGATTTGGTTGCATAATTTCTACAGCTAGTGTAGCTGGGGTTTCAGGAGGGCTTGGTCCACATGCTTACACAGCTTCAAAGCATGCTATAGTTGGATTAACAAAGAACAGTTCTTGTGAATTGGGGAAATATGGAATTAGGGTTAATTGTGTTTCACCTTTTGGTGTTGCAACATCTATGCTTGTGAATGCTTGGAGAAAAGGTGATGATGAAGATCATCATGATGATGGTCATGATGGTGGAGTTAATTTTGGATTGCCTTTAGTTGAAGAAGTTGAGAAAATGGAGGAGTTTGTTAGAGGGCTTGGTAATTTGAGAGGAACAACTTTAAGGGTTCAAGATATTGCTGAAGCTGTTCTTTATCTTGCTAGTGATGAATCTAGGTATGTTAGTGGTCATAATCTTGTGGTTGATGGTGGAGTAACTTCTTCAAGAAATTGTATTGGACTTTGA 927 0.3981 MGVMSEKPLQELPMHSTDTTFSPPSSKRLEGKIAIVTGGARGIGEATVRIFVKHGAKVVIADVEDELGTILANSLSPSTNYIHCDVSIEKDVENLVTSTVSHYGKLDIMFNNAGVLGNQSKNKSIVNFDPDEFDRVMSVNVKGVALGMKHAARVMIPRGFGCIISTASVAGVSGGLGPHAYTASKHAIVGLTKNSSCELGKYGIRVNCVSPFGVATSMLVNAWRKGDDEDHHDDGHDGGVNFGLPLVEEVEKMEEFVRGLGNLRGTTLRVQDIAEAVLYLASDESRYVSGHNLVVDGGVTSSRNCIGL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02323 308 CDD secoisolariciresinol-DH_like_SDR_c 28 300 IPR045309 GO:0016616
Vivi6g02323 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Vivi6g02323 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 200 IPR002347 -
Vivi6g02323 308 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Vivi6g02323 308 Gene3D - 20 306 - -
Vivi6g02323 308 Pfam Enoyl-(Acyl carrier protein) reductase 251 300 - -
Vivi6g02323 308 Pfam Enoyl-(Acyl carrier protein) reductase 38 224 - -
Vivi6g02323 308 PRINTS Glucose/ribitol dehydrogenase family signature 33 50 IPR002347 -
Vivi6g02323 308 PRINTS Glucose/ribitol dehydrogenase family signature 202 219 IPR002347 -
Vivi6g02323 308 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Vivi6g02323 308 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Vivi6g02323 308 PRINTS Glucose/ribitol dehydrogenase family signature 181 200 IPR002347 -
Vivi6g02323 308 PRINTS Glucose/ribitol dehydrogenase family signature 263 283 IPR002347 -
Vivi6g02323 308 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 300 IPR036291 -
Vivi6g02323 308 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 25 303 - -
Vivi6g02323 308 MobiDBLite consensus disorder prediction 1 25 - -
Vivi6g02323 308 FunFam Short-chain dehydrogenase reductase 15 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02323 Vivi-Chr6 102401815 102402989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02323 15 300 Acyl Lipid Metabolism Gene Families AT3G55290 29.900 5.66e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02323 - - tpra:123890470 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02323 6 102401815 102402989 Vivi6g02323 6 102401815 102402989 ECH
Vivi5g00952 5 21914195 21915812 Vivi6g02323 6 102401815 102402989 PCT