Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04995 ATGCCGACGCCGGTGAGCACAGCGAGGCAATGCTTAACAGACGAAGCGGCGCGTGCACTAGACGAAGCAGTATCAGTAGCGCGTAGACGAAACCACGCGCAAACAACCTCTCTCCATGCCATCTCAGCCTTACTATCATTACCCTCCAACATGCTACGCGACGCCTGCGCGCGTGCCGGAACTTCTCCCTACTCGCCGCGTCTTCAGTTTCGCGCGTTGGAACTCTCCGTCGGTGTTTCCCTCGACCGTCTCCCAACTTGCAAAACCTCCTCCTCCTCATCCGCCGTTAACGACGGTGGACCTCCGGTGTCGAACTCGCTCATGGCTGCTATTAAACGGTCTCAGGCGAATCAGCGTCGGAATCCTGATAGCTTCCATTTGCTTCAGATTATGCAGCAACAGCAACATACTCAGCAGAATCAAACGGCGTCGTTTTTGAAAGTTGAATTGAAGCATTTCATTCTTTCGATTCTTGATGACCCTATTGTAAGTCGTGTTTTCGCTGAAGCGGGTTTTCGTAGCTATGATATTAAATTCGTTTTGCTTCAACCTCCACTACCTTCTAGATTCTTCCATCGACCTTCTCCTCCGGTTTTTCTATGTAATATTGAACCGGAACCGGACCGGTTCAGGTTCGATGATAATTCCAGAAGGATTGTTGAGGTTATTGCTGGCAAGAGTCAGAGTAAAAGGAATCCTTTTTTGATGGGGGTGTATGCTAAAACCGCTCTGAAAAGGTTTATAGAGTTAGTTCAAAGTGGAAAGGTTGGTTTTTTACCTACTGAGCTTGATGGGTTGAGTGTGGTTTCGATCGAGAAGGAGATTCTTGAGTTTGTTGGTGGTGGTGGGAGTGAGGAGAAGATGGGGTTGAGATTTGATGAGGTGGGTCGTTTGGTGGAGCAATGTTTGGGGGCTGGTGTTGTAGTTAGCTTTGGGGAGATTGAGGTTTTTGTGAAGATGAATAATGATGGTGGTGTTGATGATGCTGCTGCTGGTGATGCTGTTGTGTTGGTTGTTTCGCGGTTGACAAGGTTGTTGGAGGTTTATGGTAGAAAGGTCTGGTTGGTAGGGGTAGCAGGAACCTGTGATGTGTATTCTAAGTTTCTAAGGTTGTTCCCTACGGTTGATAAGAATTGGGATCTGCATGTTTTGACTGTGACATCTGCTACTCCTTCTATGGAAGGACTCTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCCACACCTTCTGATTTCAGAAATCCCAATGTATCTTTACCTCTTTGTGACACTTGCAATGAAAAGTATGAACAAGAAGTTGCTGATAATTATGCCAAGGTAGGGCCTTCTACTTCAGCATCAACAAGTTTACCTTGGTTACAAAAAGCGAACGTGGATTCAGATAAAGGATCGGGTTTGGCAAAGACTAATGAAGACAACACAAGTTTGAATGCTAAGATCTCTGAATTGCAAAGGAAATGGAGTGATATCTGTCAACATCTTCATCGAAACAAATCATTACCTGAAATCAATGTTTCACAAACGTTAACAAGGTTCCAAGCTCCGTTCCATGAGGGGTTTCGATTCGGTACAGGAACTGGTAACTTTAATGAAATCCACTGTTCTAGTCCAATTCCCTACATGCCTAAAGAGTTACCAAATCCATTTCCATCTAAACAGATATTACCATTTTCACAACCTTTTGATTCGAGTCTTATTGTCAATGATAAAACTGGACATGTACCGAACGGTTCAAAATTCGACATACAAAGTTCTCGGGTTACCACTTCTTCTGTCACCACAGATTTGGTTTTGGGAACTACATATACATCCGTTACTCATGAGCCAGATACTCCAAAAGTAAGCGATCATAAGAAGCATCTTCCGCACTTGTCAGATTCTCTTTCGACTGAATATGATGCTATTGTCGAGAGTACTTCAAACCAAATTGCTAGATCCTCTGGTCCAACTTCAGACGGAAAATTTGAAATGGTTGATTTCAAGTCACTTTACAAGCTCCTTATCGAAAAGGTGTGGTGGCAAGAGGAGGCAATTTATGCTATCATTAGAATTATGACACTTTGTAGTTCTGGTGGTGGAAAGCATAATCGATCGAATTCAAATGTTAGAGCCGACACATGGTTTTCTTTCCTTGGACCAGACAGAGTTGGAAAAAGAAAAATTTCTTCAGAACTTGCAGAAACTCTATTTGGACACAAACAAAACATAATCTCAGTGGATTTAAACTCTCAGGACAGGTTTCAATCATTGGACTTGGTTTTCGAATGCCACAACATGCTTGGGAGGAAGACAGTTGTGGATTATATTGCTGGCGAGTTGAGTAAAAAGCCGCGTTCGATTGTGTTTCTTGAAAATATAGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTCCACGCAATAAGAACCGGCAAATTTTCATACTCGCATGGAAGGGAAATCAGCATCAACAATGCAATCTTTGTTGTGACCTCTTCCGTGTTCAAAGTTAGCGGCTGTTTCGATACGGAAAAGGAACCGAAAATGTTTTCCGAGGAAACAATCCTTGAAGCTAAAAGGTCTCAAATTGGATTATCACTTGGACATGCTTCTGAGGATGTCATGAGAAGCAGTATCACAAATGTAAGGGTTGCAAAGAGAAAAGGAACATTTCTGAATAAAAGAAAGCTAGGTGAAAACGATAGTATCGATTCCAATGAGAAAGTAACTAGCAAGACACCGAAACATGTCAAAGAAGCGTCACGGTCGTATCTTGATCTGAATATGCCTTTAGAGGAGGAGGTTGAGGAAGAAGTTGATTGTGATGACTGTGAAAGTGAACCTGTTGTTAAAAATCATGAAGCTTGGTTAAATGATTTCCTTGATCAAATTGATGGAAAAGTGGTTTTTAAGCCGTTCGATTTTGATTTACTTGCTGAGCAAATAATCAAATGCATTGACAAACAATTTCAAACGACATTTGGATCAAATTATATGCTGGAAATTGATTATGAGGTGATGTCACAGATACTTGCAGCTGCTTGGTTATCAGACAAGCAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTTGGAAGTAGCTTTGTTGAAGCTCAAAAGAAGTATCAAAATGTAGCTCAGTGTGTCATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTCTTGGAGTATGCCTTCCACCTAGAATTAGCTTGAACTGA 3231 0.4191 MPTPVSTARQCLTDEAARALDEAVSVARRRNHAQTTSLHAISALLSLPSNMLRDACARAGTSPYSPRLQFRALELSVGVSLDRLPTCKTSSSSSAVNDGGPPVSNSLMAAIKRSQANQRRNPDSFHLLQIMQQQQHTQQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKFVLLQPPLPSRFFHRPSPPVFLCNIEPEPDRFRFDDNSRRIVEVIAGKSQSKRNPFLMGVYAKTALKRFIELVQSGKVGFLPTELDGLSVVSIEKEILEFVGGGGSEEKMGLRFDEVGRLVEQCLGAGVVVSFGEIEVFVKMNNDGGVDDAAAGDAVVLVVSRLTRLLEVYGRKVWLVGVAGTCDVYSKFLRLFPTVDKNWDLHVLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPNVSLPLCDTCNEKYEQEVADNYAKVGPSTSASTSLPWLQKANVDSDKGSGLAKTNEDNTSLNAKISELQRKWSDICQHLHRNKSLPEINVSQTLTRFQAPFHEGFRFGTGTGNFNEIHCSSPIPYMPKELPNPFPSKQILPFSQPFDSSLIVNDKTGHVPNGSKFDIQSSRVTTSSVTTDLVLGTTYTSVTHEPDTPKVSDHKKHLPHLSDSLSTEYDAIVESTSNQIARSSGPTSDGKFEMVDFKSLYKLLIEKVWWQEEAIYAIIRIMTLCSSGGGKHNRSNSNVRADTWFSFLGPDRVGKRKISSELAETLFGHKQNIISVDLNSQDRFQSLDLVFECHNMLGRKTVVDYIAGELSKKPRSIVFLENIDKADLIVQNSLFHAIRTGKFSYSHGREISINNAIFVVTSSVFKVSGCFDTEKEPKMFSEETILEAKRSQIGLSLGHASEDVMRSSITNVRVAKRKGTFLNKRKLGENDSIDSNEKVTSKTPKHVKEASRSYLDLNMPLEEEVEEEVDCDDCESEPVVKNHEAWLNDFLDQIDGKVVFKPFDFDLLAEQIIKCIDKQFQTTFGSNYMLEIDYEVMSQILAAAWLSDKQKAVEDWIEHVLGSSFVEAQKKYQNVAQCVMKLVKCESIFVEEQALGVCLPPRISLN 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04995 1076 Coils Coil 473 493 - -
Vivi3g04995 1076 Gene3D - 656 972 IPR027417 -
Vivi3g04995 1076 ProSiteProfiles Clp repeat (R) domain profile. 8 188 IPR004176 -
Vivi3g04995 1076 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1046 - -
Vivi3g04995 1076 Pfam AAA domain (Cdc48 subfamily) 715 834 IPR003959 GO:0005524|GO:0016887
Vivi3g04995 1076 Gene3D - 10 183 IPR036628 -
Vivi3g04995 1076 CDD RecA-like_ClpB_Hsp104-like 666 836 - -
Vivi3g04995 1076 SUPERFAMILY Double Clp-N motif 12 125 IPR036628 -
Vivi3g04995 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 834 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04995 Vivi-Chr3 96369382 96374888 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04995 - - tpra:123913467 1637.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04995 3 96369382 96374888 Vivi3g04995 3 96369382 96374888 ECH
Vivi3g04995 3 96369382 96374888 Vivi3g04315 3 77429251 77434148 ECH
Vivi3g04315 3 77429251 77434148 Vivi3g04995 3 96369382 96374888 ECH
Vivi4g04332 4 170012041 170014258 Vivi3g04995 3 96369382 96374888 ECH