Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04315 ATGCCAACACCAGTATCCGCGGCAAGGCAATGCTTAACACCGGAAGCGGGACGGGCACTAGACGAAGCTGTAGCGGTAGCGAAACGACGCGGACATGCTCAAACGACGTCGCTTCACGCAGTTTCAGCACTGTTATCGTTACCGTCTTCGTCGATTCTCCGCGACGCGTGCTGTCGTTCGAGAAACTCGGCGTATTCGCCGAGGTTGCAGTTCAAAGCGCTTGATCTTTGTTTATCGGTGTCGCTGGATAGAGCGCCTTCTTCGCATAGTAATGTTTCTCCTGATCATGAACCGCCGGTTTCGAACTCGCTTATGGCTGCGGTGAAACGGTCTCAGGCGAATCAACGGCGGCATCCTGATAATTTTCATTTTTATCATCAGCAGCAGCAGTTGCAGAATCAGCAGACGTTTTCGGTTTCTTCTGTGAAAGTTGAGTTGCAGCATTTGATTTTGTCGATTCTTGATGACCCGGTTGTTAGTCGGGTTTTCGCGGAAGCGGGTTTCCGGAGCTCCGAGATTAAGTTGGCTATACTTCGGCCTCTTCCGCATCTCTTCCGTTCTCGTGGTCCGCCGATTTTTTTATGTAACCTGACTGAGCAGCCTCGCCGGGGGTTTGGGTTTGGGTTTCCGTTTTTGTCTGGTTTTGGTGATGAGGAGGATAATTTCCGGCGGATTGGGGAGATTCTTGTGAGGAGTAAAGGGAGGAATCCTCTGCTTCTCGGTGCATGTGGTAATGATACTCTGAGAGCCTTTATAGAGGCTGTGGAGAAAAGAAGGGAGGGGGTTTTGCCTCTCGAGCTTGCTGGGCTGCGCGTGATTTGTATTGGGAAGGAATTGGAGAGTGGTGATGGGGAGATAATTGGTTTGAGGTTGAGGGAGATTGCTGTTACGGCGGAGGAGTGCGTCGGACCCGGTGTTATAGTGAGTTTTGGGGAGTTGAAGGGTTTGGTGAATGGTGATGGTGGGTTTGGGGAGAGTGTTGTTGAGGAATTGGCGAGATTGTTGAAGATTCATTATGATAAGTTTTGGTTGGTGGGTTCTGCTGCTAGTTATGAGAGTTACTTGAAATTTCTGGGGAGGTTTCCTTCTGTGGAGAAAGATTGGGATTTGCATATTCTTCCTATCACTTCTGTTAAGGCTTCTGAATCATATCATAGTCCCAGACCAAGCTTAATGGATTCGTTTGTACCACTTGGTGGCTTTTTTTCATCACAGTCTGATTTGAAAAGGCCACTAAATGGCTCATTTGGTTGTGTTCCTCACACTCATCAATATGGTGAAAGCTGTGAAAATGAATTCCTGGCTGCTTCGAAGGAAAGATTTTCTGTTTCGGCTCCTGATTCATACCCATCTAGCTTACCTCAATGGTTAAAGACTACAGAATTTGGCACTGCAAAAGCATTGAATGTTAAGACCAAAGATGGTGTTTTGGTGGATAGTAGTGAATCTTGTACGCCGCATACTAACTTGGACAACATATGCCAAGTTCTGCATCAGCGAATCCCTGAGGAAAATACTTGTCCAATTGTTGTGGGGTTTCATTGTACTGCTGACAACAAAAACGAAGATATTGACAACCACAGAAGCAAAATTGTAGACGAATCACGTACTGAACACATCAACCTCAACTCTCATGTACCCGTTGGTGTTCAATCAGTGGCAACATTACAATCCAGAAGTCCTTTTCCCGCCCTCTTCATGGAAAAACAGGAAAACAATACTCCAAAACTAACTGAGATGTTCCAGAAAGTAAAAGATCTCGATACAGGTGACCTAAGATCTTGCAACATGTCCGGTTCAAGTGTGTCCGATGGTAGTCAACTGTCTCCCACATCCGTGACTTCAGTAACCACGGACCTTGGCTTAGGAATATGCTCCTCTCCCACCAGCAATAAATTGAAGAAACCCGAAGTTCAATATACAATGGAGCCTCCTAAGGAAACCCCTAATCGATTTTTTTCAAGCTTTAATTTGGATGAAGAGAATATCGTGAAGCATCCATCCCAATCTTCATCCTGCTTAAGTTATGACTATTGTCGACAAGTTGATGCAAGAAATCCTAAAATTATTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGATGAAGCCATAAGGGCTATTATCAGAACAATATTCAGTGGCTCAACCAAAAGGCATAAAGACCATGGAGCAAATCAGAGGGGAGACAGATGGATGAATTTCGCTGGACCTGATTGGCATGGGAAAAAGAAAATTGCGGTTTCTCTAGCTGAGTTACTGTATGGAAGCCGGGAAAACTTTACTTTTGTGGATCTATGTTCCGAGGAAGTGGTAGGATGCAATGTGAAATTTAGAGGGAAGACTAACCTTGATTTCATTGTAGACGAGTGCTGCAAGAAACCCTTGTCTGTTGTTTTCATTGAAAATGTTGACAAAGCAGATATAGTAGCTCAAACTAGTTTGTCTCAAGCCATCAGGACAGGAAAAATCACAGATTCGCATGGGCGCGAAGTTAGTGTAAACAATGCAATATTCGTGCTTTCTTTCTCAGGTTACGAAAATAGTTTGATGCACACAAGGGGACCTTCCTACTATTCCGAGGAAAGACTAAGGGAAAAAGGGGTAGCTATTACGATAAAAGTTGAACATGTGGTTAGAGACAACAGAAGCCAAAGCATCAGTGTAACCAACAATTCAATAGATATCATTCCTAATTTAAATTTCATGAACAAACGAAAACTGATCGGTGACAATGAACTTCACGATCCCAATTTTCTCTCAGATACGGCTAAAAGGCCACATACAACATCAAACTGGCTTTTAGACTTGAATCTTCCAGCTGAAGAGGACGAACAGAAACAAACAGATGATGGAAACTATGAACATGTCTCAACTGAGAACCAAAACCTTTGGTTGCAAGATTTGTATAATCTAGTTGATGAAACAGTCGTGTTTAAACCATATGATTTTGATGCACTTGTGGATAGATTGTTGAAATTGGTCAGAAGTAACTTCAACAAAATTCTTGGTTCTGAGTGTGCCTTACAAATCCAAACAGAAGTCACAGACCAATTGGTTGCAGCCGCATATGTCTCGGACAGCGATACGGAGGTGGAGAATTGGGTTGAGCAAGTTCTGTGCGGCGGATTCGCTGAAGTCCAGAGAAAATACAACCTCAGTGCTAGTTCTATTGTGAAACTTGCCCCATGTCCAGAGCAAGCTCTAAGTGTACACCTTCCATCAAGCATAATTTTAGAGTAA 3243 0.4388 MPTPVSAARQCLTPEAGRALDEAVAVAKRRGHAQTTSLHAVSALLSLPSSSILRDACCRSRNSAYSPRLQFKALDLCLSVSLDRAPSSHSNVSPDHEPPVSNSLMAAVKRSQANQRRHPDNFHFYHQQQQLQNQQTFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSEIKLAILRPLPHLFRSRGPPIFLCNLTEQPRRGFGFGFPFLSGFGDEEDNFRRIGEILVRSKGRNPLLLGACGNDTLRAFIEAVEKRREGVLPLELAGLRVICIGKELESGDGEIIGLRLREIAVTAEECVGPGVIVSFGELKGLVNGDGGFGESVVEELARLLKIHYDKFWLVGSAASYESYLKFLGRFPSVEKDWDLHILPITSVKASESYHSPRPSLMDSFVPLGGFFSSQSDLKRPLNGSFGCVPHTHQYGESCENEFLAASKERFSVSAPDSYPSSLPQWLKTTEFGTAKALNVKTKDGVLVDSSESCTPHTNLDNICQVLHQRIPEENTCPIVVGFHCTADNKNEDIDNHRSKIVDESRTEHINLNSHVPVGVQSVATLQSRSPFPALFMEKQENNTPKLTEMFQKVKDLDTGDLRSCNMSGSSVSDGSQLSPTSVTSVTTDLGLGICSSPTSNKLKKPEVQYTMEPPKETPNRFFSSFNLDEENIVKHPSQSSSCLSYDYCRQVDARNPKIIFEALSKEVSWQDEAIRAIIRTIFSGSTKRHKDHGANQRGDRWMNFAGPDWHGKKKIAVSLAELLYGSRENFTFVDLCSEEVVGCNVKFRGKTNLDFIVDECCKKPLSVVFIENVDKADIVAQTSLSQAIRTGKITDSHGREVSVNNAIFVLSFSGYENSLMHTRGPSYYSEERLREKGVAITIKVEHVVRDNRSQSISVTNNSIDIIPNLNFMNKRKLIGDNELHDPNFLSDTAKRPHTTSNWLLDLNLPAEEDEQKQTDDGNYEHVSTENQNLWLQDLYNLVDETVVFKPYDFDALVDRLLKLVRSNFNKILGSECALQIQTEVTDQLVAAAYVSDSDTEVENWVEQVLCGGFAEVQRKYNLSASSIVKLAPCPEQALSVHLPSSIILE 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04315 1080 Gene3D - 10 179 IPR036628 -
Vivi3g04315 1080 Gene3D - 658 888 IPR027417 -
Vivi3g04315 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1023 IPR027417 -
Vivi3g04315 1080 ProSiteProfiles Clp repeat (R) domain profile. 8 183 IPR004176 -
Vivi3g04315 1080 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04315 Vivi-Chr3 77429251 77434148 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04315 - - tpra:123894785 1751.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04315 3 77429251 77434148 Vivi3g04315 3 77429251 77434148 ECH
Vivi4g04332 4 170012041 170014258 Vivi3g04315 3 77429251 77434148 ECH
Vivi3g04995 3 96369382 96374888 Vivi3g04315 3 77429251 77434148 ECH
Vivi3g04315 3 77429251 77434148 Vivi3g04995 3 96369382 96374888 ECH