Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04188 ATGGCAGCAACTGAAAAGTGCACTTCCAATGGATCCTCACGATGGTCCCTCAAAGGAATGACCGCTCTCGTCACCGGCGGAACTCGCGGAATCGGACATGCCATAGTGGAAGATTTGTGCGGATTCGGTGCCACCGTCCACACTTGTTCCAGAAACCAAACAGAGCTCGATAACTGTTTGAATCAATGGCGTAGTAAAGGCTTTTCGGTTTCTGGATCTGTCTGTGATGTGTCTTCTCGAGACCAAAGGGAGAAGCTTATTCAAGAAGTTACCTCAATCTTCAATGGCAAACTTCACATTTATGTGAATAATGTTGGTGCAAACTTTAGGAAACCAACAATTGAGTATACTGCTGAAGTATATTCAGAAATTATGGCGATTAATTTAGATTCCGCGTATCATCTGTGCCAACTTACACATCCTCTTCTGAAGGCATCTGGAATGGGAAGCATTGTGTTTATTTCATCTATTGCTGGTGTGGTGAGTTTAGGTACTGGATCAGTCTATGCAGCAAGTAAAGCTGCGATCAATCAGCTTACAAAAAATTTGGCTTGTGAATGGGCGAAAGATGGCGTAAGGAGCAATTGTGTTGTTCCTGCTACCACTAATACACCACTTGTAGAACATCTGCTTCGTAACAAGCAATATGTAGATGAAATGTTGTCTCGAACTCCTCTTGGACGCATCGCGGAAGCTCAAGAAGTTTCGTCCTTGGTAGCTTTCCTTTGTCTTCCGGCTGCGTCTTACATCACAGGGCAGGTTATTTGTGTTGATGGAGGACTATCAGTGAATGGATTTCAGCCCAGTATGAGAATAACATAA 822 0.4367 MAATEKCTSNGSSRWSLKGMTALVTGGTRGIGHAIVEDLCGFGATVHTCSRNQTELDNCLNQWRSKGFSVSGSVCDVSSRDQREKLIQEVTSIFNGKLHIYVNNVGANFRKPTIEYTAEVYSEIMAINLDSAYHLCQLTHPLLKASGMGSIVFISSIAGVVSLGTGSVYAASKAAINQLTKNLACEWAKDGVRSNCVVPATTNTPLVEHLLRNKQYVDEMLSRTPLGRIAEAQEVSSLVAFLCLPAASYITGQVICVDGGLSVNGFQPSMRIT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04188 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Vivi3g04188 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Vivi3g04188 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Vivi3g04188 273 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Vivi3g04188 273 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Vivi3g04188 273 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Vivi3g04188 273 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Vivi3g04188 273 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Vivi3g04188 273 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Vivi3g04188 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Vivi3g04188 273 Gene3D - 2 266 - -
Vivi3g04188 273 PANTHER TROPINONE REDUCTASE 14 265 IPR045000 GO:0016491
Vivi3g04188 273 FunFam Short-chain dehydrogenase reductase 6 266 - -
Vivi3g04188 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 263 IPR036291 -
Vivi3g04188 273 Pfam Enoyl-(Acyl carrier protein) reductase 28 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04188 Vivi-Chr3 73747158 73748727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04188 14 268 Miscellaneous Gene Families AT2G29290 63.424 3.81e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04188 K08081 - gmx:100775806 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04205 3 74002840 74004799 Vivi3g04188 3 73747158 73748727 ECH
Vivi6g01932 6 86966881 86974361 Vivi3g04188 3 73747158 73748727 ECH
Vivi3g04188 3 73747158 73748727 Vivi3g04188 3 73747158 73748727 ECH