Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01932 ATGGCTGAATCAAAGTTGAGCAGCGTGAAGGATAAAAGATGGTCATTGGAGGGTATGATTGCATTAGTGACGGGAGGAACCCGTGGCATTGGGTACGCAATTGTTGAAGAGTTAGCGGAATTTGGAGCAGCAGTGCATATATGTTCACGTAATGAAGATGATATTAACAAATGTTTGGAAGAGTGGAAAAGCAAAGGATTTAATGTAACTGGATCAGTATTATGTGATATACTAAGTCATGAACAACGCAAGACATTAATGGAAAATGTTTCTTCCATCTTTCATGGAAAGCTCAATATTCTAGTCAACAATGCTGCAAAACCTTCAATGAAGAAAATATTAGATAATACTGAAGAGGATTTAACAAGTATAGTTGGTACCAATTTTGTGGCTGGTTACAATTTGTGTCAACTTGCACATCCACTTCTAAAGGAGTCTGGATATGGAAGCATAGTTTTTACTTCATCCATTGCTGGTTTAAGAGCTATTCCCGTTTTATCTGTTTATGCATCCACAAAAGGAGCGGTGAATATATTCACTAAGAACTTAGCATTAGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTTGCACCTGGACCTGTCAAGACTGAACTTTTGGGATCAATAATGGTATGCATTTGTCCATCCATAAATGGTATAGTGTCTCAAACTCCTATGGATCGCATGGGAGAGACACGAGAGATATCATCATTAGTTGCTTTTCTTTGTCTTCCAGCTGCATCTTACATTACTGGACAAGTTATTGCTATTGATGGAGGTTTCACTGCTTAG 795 0.3811 MAESKLSSVKDKRWSLEGMIALVTGGTRGIGYAIVEELAEFGAAVHICSRNEDDINKCLEEWKSKGFNVTGSVLCDILSHEQRKTLMENVSSIFHGKLNILVNNAAKPSMKKILDNTEEDLTSIVGTNFVAGYNLCQLAHPLLKESGYGSIVFTSSIAGLRAIPVLSVYASTKGAVNIFTKNLALEWAKDNIRANAVAPGPVKTELLGSIMVCICPSINGIVSQTPMDRMGETREISSLVAFLCLPAASYITGQVIAIDGGFTA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01932 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 264 IPR036291 -
Vivi6g01932 264 Pfam Enoyl-(Acyl carrier protein) reductase 27 263 - -
Vivi6g01932 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Vivi6g01932 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Vivi6g01932 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Vivi6g01932 264 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Vivi6g01932 264 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Vivi6g01932 264 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Vivi6g01932 264 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Vivi6g01932 264 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Vivi6g01932 264 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Vivi6g01932 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Vivi6g01932 264 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Vivi6g01932 264 Gene3D - 2 264 - -
Vivi6g01932 264 FunFam Short-chain dehydrogenase reductase 5 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01932 Vivi-Chr6 86966881 86974361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01932 11 263 Miscellaneous Gene Families AT2G29290 54.545 9.87e-93 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01932 K08081 - tpra:123892393 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01932 6 86966881 86974361 Vivi6g01932 6 86966881 86974361 ECH
Vivi6g01932 6 86966881 86974361 Vivi3g04188 3 73747158 73748727 ECH