Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04205 ATGACAGCAGTAGAAGCACAAAGTAGAGGAGGACAGAGATGGTCTCTCACAGGAATGACAGCTCTTGTAACCGGCGGCACTCGTGGCATCGGACATGCCATAGTGAATGATCTAGCTGCATTTGGTGCTACTGTCTACACTTGTTCAAGAACTGAATCAGAGCTCAACAAGTGCTTACAACAATGGCAAACTCAAGGCTTTTCAGTCACAGGTTCGGTCTGTGATGTAAGCTCTCGACCACAGAGAGAGAGCCTTGTTCAACAAGTTTCCTCTACATTCAATGGCAAGCTCAACATCTTTGTGAATAACGTTGGAACAAACTTTCGAAAGCCAACTATCGAATACACTGCTGAAGATTATTCAGAGCTGATGACAGTTAATTTTGACTCATCATTCCATCTATGCCAACTCGCATATCCTCTTCTAAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCATCTGTTGCAGGTGTTGTGAGCTTAGGTACTGGATCTGTCTATGCAGCAAGTAAAGCTGCGATTAATCAGCTTACGAAAAATCTGGCTTGTGAATGGGCACAAGACAACATAAGGAGCAATTGCGTTGTACCGTGGGCGACCAGGACTCCACTTGTTGAACATCTATTTAAAAACCAGAAGTTTGTGGATGATATTATGGCTAGAACTCCTCTTAAGCGGATTGCAGAACCGGAAGAAGTGTCGTCTTTGGTGAATTTCCTTTGTTTGCCTGCTGCTTCTTACATCACTGGTCAAGTTATTTGTGTTGATGGAGGGTTAACTGTGTTTGGATTTCAACCCAGCATGAGAATTACTTGA 819 0.4298 MTAVEAQSRGGQRWSLTGMTALVTGGTRGIGHAIVNDLAAFGATVYTCSRTESELNKCLQQWQTQGFSVTGSVCDVSSRPQRESLVQQVSSTFNGKLNIFVNNVGTNFRKPTIEYTAEDYSELMTVNFDSSFHLCQLAYPLLKESGNGSIVFISSVAGVVSLGTGSVYAASKAAINQLTKNLACEWAQDNIRSNCVVPWATRTPLVEHLFKNQKFVDDIMARTPLKRIAEPEEVSSLVNFLCLPAASYITGQVICVDGGLTVFGFQPSMRIT 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04205 272 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vivi3g04205 272 FunFam Short-chain dehydrogenase reductase 6 265 - -
Vivi3g04205 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 263 IPR036291 -
Vivi3g04205 272 Gene3D - 10 264 - -
Vivi3g04205 272 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Vivi3g04205 272 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Vivi3g04205 272 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Vivi3g04205 272 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vivi3g04205 272 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Vivi3g04205 272 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Vivi3g04205 272 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Vivi3g04205 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Vivi3g04205 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Vivi3g04205 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vivi3g04205 272 Pfam Enoyl-(Acyl carrier protein) reductase 27 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04205 Vivi-Chr3 74002840 74004799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04205 12 267 Miscellaneous Gene Families AT2G29290 61.240 1.59e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04205 K08081 - gmx:100527615 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04205 3 74002840 74004799 Vivi3g04188 3 73747158 73748727 ECH
Vivi3g04205 3 74002840 74004799 Vivi3g04205 3 74002840 74004799 ECH