Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00872 ATGGGGTGTAGAAGGTTTAGGGTGTGTCTTGTTCTTGTGTTATGTGTTGTACTGTTGGTGGGTTTAGTGAGTGGGATTGGTGTTAATTGGGGCACACAATTAACACACCCTTTGCCATCGTCCACTGTGGTGAAAATGCTGAAGGAAAATGGTATTCAGAAAGTTAAGCTTTTTGATGCTGATCCTGATATTTTAAATGCTCTAAAGAAGTCTGGGATTCAGGTGATGGTTGGAATACCAAATGACATGCTCTACACATTGGCCAACAGCATGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCATTTGTCTCATCTGCGGGTGTGGACATCAGGTATGTTGCAGTGGGAAATGAACCTTTCTTGTCAACATACAATGGTTCATTTGAAACCACAACACTTCCAGCTCTTCAAAACATCCAAGCAGCTCTAGTGAAAGCTAGTTTAGGAAACCAGGTTAAAGTGACAGTGCCTCTAAATGCTGATGTCTATCAGAGTGCACAGGTACCCTCTGATGGTGACTTCAGGCAAGACATCCATGATCTCATGGTGCAGATTGTGAAGTTCTTGAGCCAGAACAATGCCCCATTTACAGTGAACATCTATCCTTTCATCAGCCTCTATGCAGACCCCAATTTTCCTGTTGATTATGCCTTCTTCAATGGCTTTCAATCCCCCATAAATGACAATGGAAGGATCTATGACAATGTATTTGATGCCAACCATGATACTTTGGTATGGGCCCTGCAGAAAAATGGTTTTGGAAACATGCCTATAATTGTAGGAGAAGTTGGGTGGCCTACAGATGGAGACAGAAATGCAAACCTTCAATACGCGCAACGGTTCAACCAGGGCTTCATGTCGCGCTACATGGCCGGAAAGGGGACGCCGATGAGGCCCGGTCCTATGGATGCTTACTTGTTCAGTCTGATAGATGAAGATGGCAAAAGCATTCAGCCAGGTAATTTTGAAAGACATTGGGGGTTGTTTTACTATGATGGACAACCCAAGTACCAGCTTAACATAGGATCAAGAACAAATGGCTTAGTTGGTGCAACTGGGGTAGCATATCTAGCCAAAAAATGGTGCATTTTGAAACCCTCAGCAAACCTCAATGATGACCAAGTTGCACCAAGTGTGTCTTTTGCTTGTCAGAATGCAGATTGTACAAGTCTTGGATATCAAACTTCATGTGGTAGTTTAGATGCTCGTGGTAACATCTCTTATGCATTCAATAGCTATTACCAAGTGAATGATCAGATTGATAGTGCATGCAAATTCCCTGGCCTTTCTGTTGTCACTGACAAAGATCCTTCTACTGGAGATTGCAAATTCAAGATCATGATTCAGACAGATTCTGCTTGGATGCATGGGAATGGGAGAATTTGGCATCTCAGAATGGTACTCTTGGCATTTTTGTTTTTCACTCTTCTGTGA 1443 0.4269 MGCRRFRVCLVLVLCVVLLVGLVSGIGVNWGTQLTHPLPSSTVVKMLKENGIQKVKLFDADPDILNALKKSGIQVMVGIPNDMLYTLANSMQAAEKWVSKNVSAFVSSAGVDIRYVAVGNEPFLSTYNGSFETTTLPALQNIQAALVKASLGNQVKVTVPLNADVYQSAQVPSDGDFRQDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYADPNFPVDYAFFNGFQSPINDNGRIYDNVFDANHDTLVWALQKNGFGNMPIIVGEVGWPTDGDRNANLQYAQRFNQGFMSRYMAGKGTPMRPGPMDAYLFSLIDEDGKSIQPGNFERHWGLFYYDGQPKYQLNIGSRTNGLVGATGVAYLAKKWCILKPSANLNDDQVAPSVSFACQNADCTSLGYQTSCGSLDARGNISYAFNSYYQVNDQIDSACKFPGLSVVTDKDPSTGDCKFKIMIQTDSAWMHGNGRIWHLRMVLLAFLFFTLL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00872 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 436 IPR044965 GO:0004553|GO:0005975
Viun8g00872 480 FunFam Glucan endo-1,3-beta-glucosidase 8 359 456 - -
Viun8g00872 480 Pfam Glycosyl hydrolases family 17 26 343 IPR000490 GO:0004553|GO:0005975
Viun8g00872 480 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Viun8g00872 480 Gene3D - 359 457 - -
Viun8g00872 480 Pfam X8 domain 363 432 IPR012946 -
Viun8g00872 480 Gene3D Glycosidases 25 350 - -
Viun8g00872 480 FunFam Glucan endo-1,3-beta-glucosidase 5 25 350 - -
Viun8g00872 480 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
Viun8g00872 480 SMART X8_cls 363 447 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00872 Viun-Chr8 8392274 8395643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00872 6 456 Glycoside Hydrolase AT4G31140 72.345 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00872 K19893 - gmx:100775918 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00872 8 8392274 8395643 Viun9g01872 9 28517571 28519194 PCT
Viun9g02966 9 37692438 37696253 Viun8g00872 8 8392274 8395643 PCT