Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01872 ATGGCTCGAGTGCAGTTCTTTGTGTTTTGTTTGCTATTGGTGTTAGCTTTGTACCAATTTCAAGATGTCCAAGGTGCAGAGTCTGTACCAGGTCTTGGCATCAATTGGGGTGCATTAGCATCCCACCCTTTGAATCCCAACATTGTGGTAAATATGTTGAAAGACAATGGGATTAAGAAGGTTAAACTTTTCGATGCAGATCCTTGGATTTTTGGTTCTTTGGCTGGAACAGACATTGAAGCCATGATTGGAATTCCTAATGATCAATTGAGTAAATTTGCTGGAAGTAGCCATAGTGCAGAAGAATGGGTGGAAGCAAACATCACCAAACATCTTCATGGTCGTCATGGGATCGTAAACATCAGATATGTATCTGTCGGAAATGAACCATTTATGAAAGCTTACAATGGTTCATATGCGGAGACCATACTCCCAGCAATGCAAAATATTCATAGGGCTATCAACAAAGCTAGTCTTGGAGACATAGTGAAGGTCACCACAACTTTAAATGCTGATGTTTATGAGTCTCCTTCAAACAATCCCTCAGATGGAGATTTTCGGAGTGACATTCGTGACGCTATGCAACAAGTATTGAGTTTTCTTCACGAAAATAACTCGCCATTTCTTGTCAATATATACCCTTTCCTTAGTCTCTACCAGAATGAAAATTTTCCAGTAGAATTTGCATTCTTTGACGGCCAAGGAGGAACAGTTCAAGACAAAGATGTGCAATATAGTAATGTGTTTGACGCAAATTTAGACACCCTTGTTTGGTCATTGAGAAAAGCTGGCTACCCTAACATGAGAATTGTGGTCGGTGAAATTGGATGGCCAACTGATGGAAACAAAAATGCCAATAACAATAATGCAAAAAGATTCTACCAAGGGCTACTTAAGAAAATGGCAAACAATAAGGGAACCCCACTTCGCCCTGGCGCCATGGAGATTTATCTATTTTCTCTCACTGATGAGAACATGAAGAATATTGACCCTGGTAAATTTGAGCGTCACTGGGGAATTTTTGGCTACGATGGAAGTGTTAAGTTTCCAATTGATTTTTCTGGTCAGGGACAAGACAAATGGCCTATAGCAGCCAAAGGTGTCGTGTACCAGGATCACATATGGTGTGTCCTAAACCCTGATGTTAAGAACTTGAGCCTTTTACCAAGTGCAATGGACTATGCTTGTGCTAATGGGGATTGCACGAGCTTAGGATTTGGTTGTTCTTGTGATAATTTAGACCTAGCTGGCAATGCTTCCTATGCTTTCAACCAGTACTTTCAAACAAGGGACCAAAATGTTGATTCTTGCAATTTCAATGGATTAGCCACTATTGTGAAACAGGATCCATCCAGAGGAAGCTGCATATTCCCTATAGAAATTGAGAGCAACGGTGATAAGCGAAGAGCAATTCACACTCTTGGAACCCATTTGATTGGCTTGGTGTTGTTTTTTATCACATTCACATAA 1470 0.4041 MARVQFFVFCLLLVLALYQFQDVQGAESVPGLGINWGALASHPLNPNIVVNMLKDNGIKKVKLFDADPWIFGSLAGTDIEAMIGIPNDQLSKFAGSSHSAEEWVEANITKHLHGRHGIVNIRYVSVGNEPFMKAYNGSYAETILPAMQNIHRAINKASLGDIVKVTTTLNADVYESPSNNPSDGDFRSDIRDAMQQVLSFLHENNSPFLVNIYPFLSLYQNENFPVEFAFFDGQGGTVQDKDVQYSNVFDANLDTLVWSLRKAGYPNMRIVVGEIGWPTDGNKNANNNNAKRFYQGLLKKMANNKGTPLRPGAMEIYLFSLTDENMKNIDPGKFERHWGIFGYDGSVKFPIDFSGQGQDKWPIAAKGVVYQDHIWCVLNPDVKNLSLLPSAMDYACANGDCTSLGFGCSCDNLDLAGNASYAFNQYFQTRDQNVDSCNFNGLATIVKQDPSRGSCIFPIEIESNGDKRRAIHTLGTHLIGLVLFFITFT 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01872 489 ProSitePatterns Glycosyl hydrolases family 17 signature. 268 281 IPR000490 GO:0004553|GO:0005975
Viun9g01872 489 SUPERFAMILY (Trans)glycosidases 32 353 IPR017853 -
Viun9g01872 489 Gene3D Glycosidases 31 360 - -
Viun9g01872 489 Gene3D - 368 465 - -
Viun9g01872 489 Pfam X8 domain 375 444 IPR012946 -
Viun9g01872 489 Pfam Glycosyl hydrolases family 17 32 353 IPR000490 GO:0004553|GO:0005975
Viun9g01872 489 FunFam Glucan endo-1,3-beta-glucosidase 8 370 466 - -
Viun9g01872 489 SMART X8_cls 374 457 IPR012946 -
Viun9g01872 489 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 446 IPR044965 GO:0004553|GO:0005975
Viun9g01872 489 FunFam Glucan endo-1,3-beta-glucosidase 5 31 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01872 Viun-Chr9 28517571 28519194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01872 26 469 Miscellaneous Gene Families AT5G64790 54.955 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01872 - - gmx:100794658 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01872 9 28517571 28519194 Viun9g01872 9 28517571 28519194 ECH
Viun8g00872 8 8392274 8395643 Viun9g01872 9 28517571 28519194 PCT