Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02080 ATGTCCCACACACCACCGCAAGCCCTCGATTCCGAGGAGCCAGCCTCCGAATCCGCCGCCACTGCCGCCCAAACCCCCGACTCCCATGCCGCCACGCTCCTCCACCTTTCCTTCAACCAGGATTCCGGATGCTTCGCCGCGGCCACTGACCGCGGTTTCCGCATCTACAACTGCGACCCTTTCCGGGAGATCTTCCGCCGCGATTTCGGCCCCGGCGGCGGCGTTGGCCTCGTCCACATGCTCTTCCGCTGCAACATACTCGCCTTCGTCGGCGGCGGCGCCGACCCACGTTACCCCCCTAACAAGGTTATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTATCCTTCCGCTCTGAGGTGAAGGGCGTCCGTCTCCGGCGCGACCGCATCGTGGTGGTCCTGGCGCACAAGATCTTTGTGTACAACTTCTCCGATCTCAAGGTGCTGCACCAAATTGAGACCATCGCTAACCCTAAGGGCCTTTGCGACCTCTCCCACGTTTCGGCCACCATGGTTCTAGTCTGCCCCGGGTTGCAGAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCCAAGAGGACCAAGTTCATCATGGCGCACGATTCCCGAATTGCGTGTTTTTCTCTCACGCATGATGGCAGGTTGCTCGCCACCGCCAGCTCCAAGGGCACCCTCATTAGGCTCTTCAATACCCTCGATGGTTCATTGCTCCAAGAGGTAAGGAGGGGTGCAGACCGAGCAGAGATATACAGCCTTGCATTCTCTCCTACTGCGCAGTGGCTGGCTGTTTCAAGTGACAAGGGGACCGTTCATGTTTTCAACCTGAAGGTTGATTCTGGACTGATGGGGCATGACAGATCGAACAGTACTTCGGAGGCTAATCCTGCTAACCCTACAGCTGTTTCATCTCTTTCGTTTATTAAAGGTGTGCTACCTAAGTATTTTAGCTCGGAGTGGTCCGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAGTATATTGTTGCATTTGGCCATCAAAAGAATACAATTGTAATACTAGGCATGGATGGCAGCTTCTACCGATGTCAGTTTGACTCTGCGAGCGGTGGAGAGATGACCCAACTTGAATATTATAATTTCCTAAAGGCAGAAGACACATTCTAG 1149 0.5527 MSHTPPQALDSEEPASESAATAAQTPDSHAATLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGADPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFSDLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFSLTHDGRLLATASSKGTLIRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLMGHDRSNSTSEANPANPTAVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGSFYRCQFDSASGGEMTQLEYYNFLKAEDTF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02080 382 FunFam Autophagy-related protein 18a isoform A 31 361 - -
Viun7g02080 382 SUPERFAMILY WD40 repeat-like 28 278 IPR036322 GO:0005515
Viun7g02080 382 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 27 375 - -
Viun7g02080 382 Gene3D - 33 369 IPR015943 GO:0005515
Viun7g02080 382 Pfam WD domain, G-beta repeat 245 276 IPR001680 GO:0005515
Viun7g02080 382 SMART WD40_4 235 276 IPR001680 GO:0005515
Viun7g02080 382 SMART WD40_4 19 57 IPR001680 GO:0005515
Viun7g02080 382 SMART WD40_4 192 232 IPR001680 GO:0005515
Viun7g02080 382 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02080 Viun-Chr7 25602194 25605021 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02080 K22991 - gmx:100787427 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02080 7 25602194 25605021 Viun7g02080 7 25602194 25605021 ECH
Viun1g02725 1 36851755 36855359 Viun7g02080 7 25602194 25605021 ECH
Viun1g01970 1 31019131 31025655 Viun7g02080 7 25602194 25605021 PCT