Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02725 ATGGCTACGCTTTCTGCAAGCGCTTCTCCTCCATGGCCAAACCCTGATCCCACCACCTCCCCCAGTTCAAATCCAAACCCTAATTTCCTCCCCGACCAGTCCCAAACACTCGACTTCGAATCCCTCATGCCTCCGCAACATAAATCGCCACAGCAATCCCTCTCCCCCGCCTCCTCGCCACCGGGATTGTCCCCAGCGGCGCCCCCGACGTTGCTCCACCTCGCCTTCAACCAGGACCAGGCTTGCTTCTCCGCCGCCACTGACAACGGTTTCCGCATCTACAATTGCAACCCCTTCAGCGAGCAATTCCGCCGCGAGTTTGACGGCGGCGGAATCGGCCACGTCGAGATGCTCTTCCGATGCAACATCATCGCCCTCGTCGGCGGCGGACCCCAGCCCCATTTCCCTCCCAACAAGGTCATGATCTGGGACGACCACGAGGGCTGCTGCATCGGTGATTTATCCCCTCGCGCCGCGGTTCGCAGCGTCCGCCTCCGCCGCGATCGGATTATCGTCGCCGTCGAGCAGAGGATTTTGGTCTACAACTTCCTGGACCTTAATCTCTTGCACCAGATTGAGACCTATCCCAACCCTAAGGGTCTCTGCGCGGTTTCGCAACTGTCTGATTCGCTCGTTCTCGCATGCCCTGGGTTGCAGAAGGGTCAGATTCGCGTGGAGCACTACTCGCAGAAGAAGACAAAGTTCATATCAGCGCATGATTCCAAAATTGCTTGTTTAGCTCTCACGCTTGATGGGCAGTTAATTGCCACCGCCAGCTCCAAGGGCACGCTGATTCGAATTTTCGACACGGTTCAGGGCACAATCCTTCAGGAAGTGAGAAGGGGTGCAAATGTTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCGGTGGCTTGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTTAAGGTTAATTCTAGCTTCTCCGAGGAAGAAAAGCCTCAAAATGCATCCAATTCAGATACTGCCATTACCCCATCTAACTCATCTCGCTCCTTCAGCAAATTTAAAGGAGTGTTACCCAAGTATTTCAATTCTGAGTGGTCGGTTGCTCAGTTTCGCTTACAAGAGGGCTCTCACTACATTGTTGCATTTGGTCACGAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATAGATGCCAATTTGATCCAGTACAAGGAGGGGAGATGACTCAACTGGAGTATCATAACTTTTTAAAGCCAGAACCAGAAACAACCTTGTGA 1272 0.5244 MATLSASASPPWPNPDPTTSPSSNPNPNFLPDQSQTLDFESLMPPQHKSPQQSLSPASSPPGLSPAAPPTLLHLAFNQDQACFSAATDNGFRIYNCNPFSEQFRREFDGGGIGHVEMLFRCNIIALVGGGPQPHFPPNKVMIWDDHEGCCIGDLSPRAAVRSVRLRRDRIIVAVEQRILVYNFLDLNLLHQIETYPNPKGLCAVSQLSDSLVLACPGLQKGQIRVEHYSQKKTKFISAHDSKIACLALTLDGQLIATASSKGTLIRIFDTVQGTILQEVRRGANVAEIYSLAFSSTARWLAVSSDKGTVHVFSLKVNSSFSEEEKPQNASNSDTAITPSNSSRSFSKFKGVLPKYFNSEWSVAQFRLQEGSHYIVAFGHEKNTVIILGMDGSFYRCQFDPVQGGEMTQLEYHNFLKPEPETTL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02725 423 Pfam WD domain, G-beta repeat 286 312 IPR001680 GO:0005515
Viun1g02725 423 SUPERFAMILY WD40 repeat-like 67 321 IPR036322 GO:0005515
Viun1g02725 423 MobiDBLite consensus disorder prediction 25 60 - -
Viun1g02725 423 FunFam Autophagy-related protein 18a isoform A 69 400 - -
Viun1g02725 423 SMART WD40_4 47 95 IPR001680 GO:0005515
Viun1g02725 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Viun1g02725 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Viun1g02725 423 Gene3D - 47 394 IPR015943 GO:0005515
Viun1g02725 423 MobiDBLite consensus disorder prediction 1 66 - -
Viun1g02725 423 MobiDBLite consensus disorder prediction 10 24 - -
Viun1g02725 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 68 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02725 Viun-Chr1 36851755 36855359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02725 K22991 - gmx:100781692 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02725 1 36851755 36855359 Viun1g02725 1 36851755 36855359 ECH
Viun1g02725 1 36851755 36855359 Viun7g02080 7 25602194 25605021 ECH