Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01967 ATGGCCCCTGTTATGACCACCGTGAAACCCAACCTCACCAAAGCTGAAGCTAAAACCGCCGAGGGTGGTGGCCGTGCCTACGTCACCTTCCTCGCCGGAAACGGTGACTACGTGAAAGGTGTGGTTGGGTTGGCGAAAGGTCTTCGGAAGGTGAAGAGCATGTACCCTCTGGTGGTAGCAATGTTACCGGATGTTCCTGAAGAGCATCGCAACATCCTCATCTCCCAAGGCTGCATTGTCAGAGAGATTGAGCCCGTGTACCCTCCGGAAAACCAGACCCAGTTCGCCATGGCATATTACGTCATCAACTACTCCAAGCTAAGAATCTGGGAGTTTGTGGAATACTCTAAGATGATTTACCTAGATGGTGACATCCAAGTGTTTGACAACATCGACCACTTGTTCGACTTGCCTGACAACTACTTCTACGCGGTGAAGGATTGTTTCTGTGAGCCCACTTGGGCCCATACTCCGCAGTATAAGATCCATTACTGTCAGCAGTGCCCTGATAAGGTTCAGTGGCCCACTAACTTTGGGCCCAAGCCTCCTCTCTATTTCAACGCTGGGATGTTTGTTTACCAGCCCAATCTGGCTACCTACAAGGACCTTCTTCAAACAGTCCAAGTCACCAAGCCCACTTCCTTTGCTGAACAAGATTTTCTGAACATGTACTTCAAGGATAAGTATAGGCCAATTCCTAATGTGTACAATCTTGTGTTGGCCATGTTATGGCGTCATCCTGAGAATGTTGAGCTTGAGAAAGTTAAGGTGGTTCATTACTGTGCTGCGGGATCAAAGCCTTGGAGGTATACTGGGAAAGAGGAGAACATGCAGAGAGAAGATATAAAGATGTTAGTGAAGAAGTGGTGGGATATATATGAGGATGAGACTTTGGATTATAACTATTCACTGAATGCAGAAAGATTCACAGAAGCGCTTTTGGAGGCTGGTGGACTGAATTACGTTCCTGCTCCATCTGCTGCTTAA 987 0.4752 MAPVMTTVKPNLTKAEAKTAEGGGRAYVTFLAGNGDYVKGVVGLAKGLRKVKSMYPLVVAMLPDVPEEHRNILISQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFDNIDHLFDLPDNYFYAVKDCFCEPTWAHTPQYKIHYCQQCPDKVQWPTNFGPKPPLYFNAGMFVYQPNLATYKDLLQTVQVTKPTSFAEQDFLNMYFKDKYRPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGKEENMQREDIKMLVKKWWDIYEDETLDYNYSLNAERFTEALLEAGGLNYVPAPSAA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01967 328 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 24 301 IPR029044 -
Viun7g01967 328 PANTHER GLYCOGENIN SUBFAMILY MEMBER 14 297 - -
Viun7g01967 328 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 297 IPR029044 -
Viun7g01967 328 FunFam Hexosyltransferase 23 301 - -
Viun7g01967 328 CDD GT8_Glycogenin 25 295 - -
Viun7g01967 328 Pfam Glycosyl transferase family 8 29 271 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01967 Viun-Chr7 24752150 24753738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01967 1 328 Glycosyltransferase AT1G56600 74.260 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01967 K18819 - gmx:548050 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01967 7 24752150 24753738 Viun7g01967 7 24752150 24753738 ECH
Viun1g02857 1 37620346 37622269 Viun7g01967 7 24752150 24753738 ECH
Viun1g02965 1 38372726 38375473 Viun7g01967 7 24752150 24753738 PCT