Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01858 ATGAGGCATGCTCATATTTTACCACTAGCATTGTCCTTATTTTTCCTTACTTTGTTTCTTCCCACCCAAGCTAGGTACCATTTCCATAAAAAACACAAACACTCGAACTATCATAATGCACCTGAAATTTCACCTTCTCCTTCTCCATTTTCTGGACCTTCTAGCAGCCCCCCCGATGAAGCTCCTTCTCCTAGCCCCTCTGTTGATGAGAACTACCACAACGCATCTAATAACTTCTTTGATGTTCGAGCATTTGGAGCCATCGGAGATGGAGTAACTGATGCTACAGAGTCATTCAAGATGGCATGGGACACTGCTTGCCAAAGTGAATCACCTGTTAAAGTTATCCTTGTTCCCCAAGGTCTCTCCTTCGTCATTCAATCTGCTATCTTCACTGGTCCTTGTAAAGGTGGCTTAGTACTTAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGACTCTTGGCCAAACAACACCAGTAGGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGTTGTCACTTGAAGGAAGTGGTTTAATAGATGGTAGAGGAGCAAAATGGTGGGACCTCCCTTGCAAGCCTCATAAGGGACCCCATGGGACAACATCTCCAGGACCTTGCGACAGCCCTGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGAGTGTACAAGGACTTAAAATCAAGAACAGCCCCCAGTTCCACTTCAGATTCGATGGCTGCGAAAGCGTCCACGTGGAATCAATCTACATAACAGCTCCAGCACTCAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTCAAAATATATAATTCGGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATAACATGTGGACCTGGTCATGGTATAAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGTCAGATAATGGGGTTAGGATCAAGACGTGGCAGGGTGGATCAGGATCAGTATCAGGGGTGACATTTAGTAATATTCATATGGAAAGTGTTAGAAACCCAATGATAATTGATCAGTTTTACTGCCTGAGTAAGGATTGCTCGAACAAGAGCTCTGCAGTGTTTGTATCGAATATATCTTACACAAACATAAAGGGAACATATGATATAAGGCACCCTCCTATGCATTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCAGCTGAGGGAGACATGGTGCTTGATCCTTACTGCTGGAGTGCCTATGGAAGCTCTGAGACACTAACCATTCCCCCAGTCTCTTGCTTGCTTGAAGGCCTTCCCCAGTCCATTTCGGGAAATGACGTAGACCATTGCTGA 1431 0.4472 MRHAHILPLALSLFFLTLFLPTQARYHFHKKHKHSNYHNAPEISPSPSPFSGPSSSPPDEAPSPSPSVDENYHNASNNFFDVRAFGAIGDGVTDATESFKMAWDTACQSESPVKVILVPQGLSFVIQSAIFTGPCKGGLVLKVDGTLMPPDGPDSWPNNTSRRQWLVFYRINGLSLEGSGLIDGRGAKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLSVQGLKIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPMIIDQFYCLSKDCSNKSSAVFVSNISYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPAEGDMVLDPYCWSAYGSSETLTIPPVSCLLEGLPQSISGNDVDHC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01858 476 Gene3D - 65 461 IPR012334 -
Viun7g01858 476 MobiDBLite consensus disorder prediction 46 64 - -
Viun7g01858 476 Pfam Glycosyl hydrolases family 28 107 429 IPR000743 GO:0004650|GO:0005975
Viun7g01858 476 PANTHER - 78 447 - -
Viun7g01858 476 SMART pbh1 293 313 IPR006626 -
Viun7g01858 476 SMART pbh1 270 291 IPR006626 -
Viun7g01858 476 SMART pbh1 323 344 IPR006626 -
Viun7g01858 476 SMART pbh1 243 269 IPR006626 -
Viun7g01858 476 SMART pbh1 352 373 IPR006626 -
Viun7g01858 476 ProSitePatterns Polygalacturonase active site. 300 313 IPR000743 GO:0004650|GO:0005975
Viun7g01858 476 SUPERFAMILY Pectin lyase-like 75 464 IPR011050 -
Viun7g01858 476 FunFam Polygalacturonase At1g48100 family 68 463 - -
Viun7g01858 476 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01858 Viun-Chr7 23769417 23771851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01858 76 476 Glycoside Hydrolase AT1G02460 71.287 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01858 - - gmx:100792285 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01858 7 23769417 23771851 Viun7g01858 7 23769417 23771851 ECH
Viun1g02865 1 37666840 37669248 Viun7g01858 7 23769417 23771851 ECH
Viun6g01902 6 25979832 25982769 Viun7g01858 7 23769417 23771851 ECH
Viun1g02865 1 37666840 37669248 Viun7g01858 7 23769417 23771851 PCT