Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02865 ATGAAGCATTCTCCTATTTCACCACTAGCATTCTCTATATTTTTCCTTACTTTATTTCTTCTGGTCCAAGCTAGGCATCATTCTCATACAAAACACAAACACTCACATTCTCATAAATCTTCTAAACATTCAAATCCTGCACCTCCTTACCCTCCTCATAATAGCAATGCTTCTGTGGTTTTGGATGTACGAACATTTGGAGCTATAGGAGATGGAAAGACAGATGATACAGAGGCATTTAAGATGGCATGGGACACTGCTTGCCAGAGTGAATCCGCAGTTAATGCTATTCTTGTACCTCAAGGTTTCTCTTTCCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAAGTTTCATGGTGTTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCCGAATCTTGGCCAAAGAACAATAGTAGGCACCAATGGTTGGTGTTTTATAGAATCAATGGAATGTCACTGGAAGGAAATGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTACCCTGTAAGCCTCACAAGGGACCTAATGGGACAACACTCCCTGGACCCTGTGATAGCCCAATTGCAATAAGGTTTTTTACGAGTTCCAACTTGACTGTGCAAGGACTAAGGATAAAGAACAGCCCCCAGTTTCATTTCAGATTTGATGGCTGCAAAAACGTCCACATAGAATCAATTTACATAACAGCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACAAATGAAGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGATTGTGTATCCATTGGATCCGGCTGCAATGATGTCGACATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTCGAGCCTGTGTTTCAGACATTGTGGTGAGAGATTCAGTTATAAAAATGACAGAAAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTGTCTGGAGTGACATTCAACAATATTCATATGGTCGGTGTAAGAAATCCAATCATAATTGACCAATTCTACTGCCTCACAAAGGATTGCACCAACAAGACCTCTGCAGTATCTGTATCAAATATTATTTACACAAACATAAGGGGTACTTATGATATAAGGAGCCCCCCAATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATCGAGCTTCTTCCAGCTGAAGGAGACATAGTGCATGACCCTTTCTGCTGGAATGCGTATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCATGCTTGCTCGAGGGCACTCCTCAATCCGTGTCAGACTTTGACATAACTCGTTGCTGA 1374 0.4163 MKHSPISPLAFSIFFLTLFLLVQARHHSHTKHKHSHSHKSSKHSNPAPPYPPHNSNASVVLDVRTFGAIGDGKTDDTEAFKMAWDTACQSESAVNAILVPQGFSFLIQSTIFTGPCQSFMVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGNGLIDGRGEKWWDLPCKPHKGPNGTTLPGPCDSPIAIRFFTSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNEVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSDIVVRDSVIKMTENGVRIKTWQGGSGSVSGVTFNNIHMVGVRNPIIIDQFYCLTKDCTNKTSAVSVSNIIYTNIRGTYDIRSPPMRFACSDSVPCTNLTLSEIELLPAEGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVSDFDITRC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02865 457 ProSitePatterns Polygalacturonase active site. 281 294 IPR000743 GO:0004650|GO:0005975
Viun1g02865 457 MobiDBLite consensus disorder prediction 30 54 - -
Viun1g02865 457 PANTHER - 58 428 - -
Viun1g02865 457 SMART pbh1 251 272 IPR006626 -
Viun1g02865 457 SMART pbh1 224 250 IPR006626 -
Viun1g02865 457 SMART pbh1 304 325 IPR006626 -
Viun1g02865 457 SMART pbh1 333 354 IPR006626 -
Viun1g02865 457 SMART pbh1 274 294 IPR006626 -
Viun1g02865 457 FunFam Polygalacturonase At1g48100 family 49 444 - -
Viun1g02865 457 SUPERFAMILY Pectin lyase-like 51 448 IPR011050 -
Viun1g02865 457 Pfam Glycosyl hydrolases family 28 91 410 IPR000743 GO:0004650|GO:0005975
Viun1g02865 457 Gene3D - 47 447 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02865 Viun-Chr1 37666840 37669248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02865 60 457 Glycoside Hydrolase AT1G02460 71.571 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02865 - - gmx:100778836 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02865 1 37666840 37669248 Viun1g02865 1 37666840 37669248 ECH
Viun1g02865 1 37666840 37669248 Viun7g01858 7 23769417 23771851 ECH
Viun6g01902 6 25979832 25982769 Viun1g02865 1 37666840 37669248 ECH
Viun1g02865 1 37666840 37669248 Viun7g01858 7 23769417 23771851 PCT