Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01902 ATGAGTCTGATTCGATGGTGTTTTATCCTATGGGTTACCATGATTATTTTTATCCATAATTGGGATAGTGTGGAAGGAAGATACCACTATCACAAGGGGCAGAAGAAAAGTCCTTCCCCTGCACCAGAGGAACCTTCTTCACCTTCACCTTCACCTCCTTCCATTTCCCCTGGTGTTCCCTCTGACCCTTATCCCAGTGATCCTGGGGATTCCCCTTCAAACTGCATTTTCGATGTAAGATCCTTTGGGGCAGTTGGAGATGGTTCAGCTGATGACACACAATCATTCGTGGCAGCATGGAAAGCAGCTTGTGCAGTAGAGTCAGGAGTTGTTCTTGTTCCAGAAAATTACTGTTTCAAGATAACTTCGACTATCTTTACAGGTCCATGCAAGCCTGGACTGGTATTTCAAGTGGATGGTACTCTCATGGCACCTGATGGACCAGAATCATGGCCTAAGGAAGACAGCCACAGTCAATGGCTTGTGTTCTATCGACTCGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGCAATGGGGAACAGTGGTGGGATCTTCCTTGCAAACCTCACCGGGGTCCCGATGGAAAAACTGTATCAGGACCATGTGACAGCCCAACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGCTGAGTGGGGTAAAGATTCAAAACAGTCCTATGTTCCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATAGACAAGTTGTCAATTTCTTCTCCTAAACTCAGTCCAAATACTGACGGAATCCACTTAGGAAACACAAAGGGTGTTGGGATATATAACTCCATGATAAGCAATGGTGACGATTGCATCTCGATTGGACCCGGGTGCTCAGACGTGGACATAGAGGGTGTTACTTGTGCTCCCACCCATGGTATTAGCATTGGAAGCCTCGGAGTGCACAATTCGCAGGCATGTGTCTCAAACTTAACTGTTCGCAACACCATCATAAAGGAATCAGACAATGGCCTGAGAATCAAGACATGGCAAGGTGGAACGGGGTCAGTGAGTGGCCTAAGATTTGAAAACATCCAAATGGAGAATGTGAGGAACTGCATCATCATTGACCAGTACTACTGCTTGTCGAAAGAGTGTCTGAATCAAACTTCAGCAGTGCATGTAAACAATGTGATATATAAGAACATAAAGGGTACTTATGATGTGAGAACTCCTCCTATACACTTTGCTTGCAGTGACAGTGTGGCATGCACCAACATAACACTCTCTGAGATAGAGCTTTTGCCATACGAAGGGGCATTAGTAGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTGATTGCTTAAGAGAAGGTGAACCTGATACAGTGGTGGAGCTCTCTGCCTACGAATGTAGTAGTTAA 1422 0.4515 MSLIRWCFILWVTMIIFIHNWDSVEGRYHYHKGQKKSPSPAPEEPSSPSPSPPSISPGVPSDPYPSDPGDSPSNCIFDVRSFGAVGDGSADDTQSFVAAWKAACAVESGVVLVPENYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVSGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNNVIYKNIKGTYDVRTPPIHFACSDSVACTNITLSEIELLPYEGALVDDPFCWNAYGTQETMTIPPLDCLREGEPDTVVELSAYECSS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01902 473 MobiDBLite consensus disorder prediction 41 67 - -
Viun6g01902 473 Gene3D - 69 462 IPR012334 -
Viun6g01902 473 SUPERFAMILY Pectin lyase-like 74 470 IPR011050 -
Viun6g01902 473 MobiDBLite consensus disorder prediction 32 70 - -
Viun6g01902 473 Pfam Glycosyl hydrolases family 28 111 424 IPR000743 GO:0004650|GO:0005975
Viun6g01902 473 SMART pbh1 347 368 IPR006626 -
Viun6g01902 473 SMART pbh1 318 339 IPR006626 -
Viun6g01902 473 SMART pbh1 288 308 IPR006626 -
Viun6g01902 473 SMART pbh1 238 264 IPR006626 -
Viun6g01902 473 SMART pbh1 265 286 IPR006626 -
Viun6g01902 473 PANTHER - 75 443 - -
Viun6g01902 473 FunFam Polygalacturonase At1g48100 family 65 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01902 Viun-Chr6 25979832 25982769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01902 9 470 Glycoside Hydrolase AT1G48100 71.336 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01902 - - gmx:100785528 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01902 6 25979832 25982769 Viun6g01902 6 25979832 25982769 ECH
Viun6g01902 6 25979832 25982769 Viun1g02865 1 37666840 37669248 ECH
Viun6g01902 6 25979832 25982769 Viun7g01858 7 23769417 23771851 ECH