Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03054 ATGGAGTCTTTTCAGAAGCAAATCAAAACCCAAATTCTGATCAAATTCATTATAGTCTGCTCTTCATTTTTTGCCATTTCTATATGCGTATCAGTGCTACTCCTAGCAAAAACAAAGATAGTAGAACCGAGTTATTCACCACAACAAGTCTCACAGTCTGATCTCACCACTGTTGATCATCTTGTATTTGGAATTGCCTCAACCGGAGCTTCATGGTCGTGGAGGAAGCAATACATCAAGCTATGGTGGAACACCATACCCAATAAAACCATGAGAGGATGTGTTTTCGTAGATACCCTCCCAAATGAAAATGTAAACAACGATGCTTCTCTTCCTCCTCTCTGTGTCTCCCAAGACACTTCCAAGTTTCTCTACACTTACGTGGGTGGTCTACGCTCAGCAATCCGTTTGACCCGTATTGTGAAAGAGATCGTGGCACTGAACCATTCTGGTGTTAGATGGTATGTGTTTGGGGATGATGACACCATTTTCTTCCCTCACAATCTGCTCAAAACTCTTTCCAAATATGACCACAGGCTTTGGTACTATGTTGGCTCCACCTCGGAGATTTATGATGCCACCCAGGTTTTTGGTTTTGAAATGGCTTTCGGTGGAGGTGGTTTTGCCATCAGTTCCTCCCTCGCACAAGTCCTAGCCAAGGTTCTTGATTCATGCATACAAAGGTATCCTCATCTCTATGGAAGTGATGCTAGGGTCTACTCTTGCATAACTGAACTAGGTGTCGGATTAACACATGAACCAGGTTTTCATCAGGTTGATTTGCGGGGAAATATCTTTGGCCTTTTGGCTTCTCATCCGTTAACTCCATTATTGTCCCTACATCACCCAGATCACACTGATCCTATCTTTCCCAACATGTCAACCGAAAAATCGCTGCAACATTTATTTGAAGCTGTTCATGTTGATTCCGAGAGGATCCTACAGCAAACAGTTTGTTACGAGAAGAAGTTGTCATGGACAATTTCTGTGTCGTGGGGCTATGCTGTTCAAGTGTTCCAGAACAACATGCTTTTGCCAGAGGTTGTGAGAGTGGAGAAAACATTCAGACAATGGTTGCCGGGAAATGTTTTGAAAGGAATATATAATTTCAATACAAGAGAACTTCACCCTGACCCGTGTAAAAGATCCACCATTTTCTACCTAGATGAAGTTTCTTCTGCCAAAGATGGTAGCATAAGCAGTTACAAGAAGAATTTTCAAGATTGTTCATACAATTCATCGATGAGTAAATTGGAAGTGATCAAAGTGATGACAAATAAGTTAAACCTTGACAACAAACAGACCCCAAGACGGCACTGTTGTGATGTGTTGCCCTCTAATGGTGGTAACTTGATGGAAATTGCAATCAGAGAGTGCAATTATGAAGAACTGATTTTTCTGAACTGA 1407 0.4165 MESFQKQIKTQILIKFIIVCSSFFAISICVSVLLLAKTKIVEPSYSPQQVSQSDLTTVDHLVFGIASTGASWSWRKQYIKLWWNTIPNKTMRGCVFVDTLPNENVNNDASLPPLCVSQDTSKFLYTYVGGLRSAIRLTRIVKEIVALNHSGVRWYVFGDDDTIFFPHNLLKTLSKYDHRLWYYVGSTSEIYDATQVFGFEMAFGGGGFAISSSLAQVLAKVLDSCIQRYPHLYGSDARVYSCITELGVGLTHEPGFHQVDLRGNIFGLLASHPLTPLLSLHHPDHTDPIFPNMSTEKSLQHLFEAVHVDSERILQQTVCYEKKLSWTISVSWGYAVQVFQNNMLLPEVVRVEKTFRQWLPGNVLKGIYNFNTRELHPDPCKRSTIFYLDEVSSAKDGSISSYKKNFQDCSYNSSMSKLEVIKVMTNKLNLDNKQTPRRHCCDVLPSNGGNLMEIAIRECNYEELIFLN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03054 468 Pfam Protein of unknown function, DUF604 196 441 IPR006740 -
Viun5g03054 468 Gene3D - 48 308 - -
Viun5g03054 468 PANTHER FRINGE-RELATED 15 465 - -
Viun5g03054 468 FunFam Fringe-related protein-like 48 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03054 Viun-Chr5 41721200 41722939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03054 56 434 Glycosyltransferase AT1G05280 54.639 2.26e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03054 - - gmx:100779943 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03054 5 41721200 41722939 Viun5g03054 5 41721200 41722939 ECH
Viun5g03054 5 41721200 41722939 Viun11g01552 11 31857115 31859592 PCT
Viun11g01553 11 31859843 31863766 Viun5g03054 5 41721200 41722939 PCT