Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02332 ATGTACAGAGAGCGAGGAGTAGGATCCAAATCGGAGGTAACTTCCGCTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCTAGAGCCGCCGGCATCAACGGCAAGGACCGCTCATCCTCCTCTTCCCTCTTAGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCTGACGAAGAGTCTGAAACAGACAGCGAGGAGTCTGATGTTAGCGGTTCCGATGGTGATGACACGTCTTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAGTTTTTCTGTGAGGTTGATGACGATTACATCCAGGACGATTTCAACCTGTGCGGATTAAGCAGTCAAGTGCCTTACTACGATTATGCTCTGGATTTGATTTTGGATGTTGAGTCCTCCCATGGTGACATGTTTACCGAGGAACAAAATGAGTTAATTGAATCAGCAGCCGAAATGCTATATGGTCTGATTCATGCCCGGTATATATTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCGAGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCGAGATCCAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGACGGTGCTTATTTTGGAACTACATTTCCTCACCTGTTCCTCATGACTTATGGACAACTAAAACCACAGAAACCATCACAGAGCTATGTTCCAAGAGTTTTTGGCTTCAAACTTCACAAGCCTTGA 858 0.4744 MYRERGVGSKSEVTSADRKRINDVLDKQLERSSPSTSRAAGINGKDRSSSSSLLAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02332 285 SUPERFAMILY Casein kinase II beta subunit 96 284 IPR035991 GO:0005956|GO:0019887
Viun2g02332 285 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 91 195 IPR016149 GO:0005956|GO:0019887
Viun2g02332 285 MobiDBLite consensus disorder prediction 1 27 - -
Viun2g02332 285 MobiDBLite consensus disorder prediction 28 75 - -
Viun2g02332 285 PRINTS Casein kinase II regulatory subunit family signature 115 129 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 PRINTS Casein kinase II regulatory subunit family signature 170 191 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 PRINTS Casein kinase II regulatory subunit family signature 217 238 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 PRINTS Casein kinase II regulatory subunit family signature 98 114 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 PRINTS Casein kinase II regulatory subunit family signature 245 262 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 ProSitePatterns Casein kinase II regulatory subunit signature. 199 230 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 SMART CK_II_beta_2 98 281 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 PANTHER CASEIN KINASE II SUBUNIT BETA 77 284 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 Gene3D - 196 270 - -
Viun2g02332 285 FunFam Casein kinase II subunit beta 91 195 - -
Viun2g02332 285 Pfam Casein kinase II regulatory subunit 98 281 IPR000704 GO:0005956|GO:0019887
Viun2g02332 285 MobiDBLite consensus disorder prediction 1 94 - -
Viun2g02332 285 FunFam Casein kinase II subunit beta 196 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02332 Viun-Chr2 30604521 30607684 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02332 K03115 - gmx:100799304 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02332 2 30604521 30607684 Viun2g02332 2 30604521 30607684 ECH
Viun2g02332 2 30604521 30607684 Viun3g04066 3 48322394 48325198 PCT
Viun3g04069 3 48337523 48341137 Viun2g02332 2 30604521 30607684 PCT