Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04066 ATGTATAAAGAACGAGGAGGTGTTTCCGTCACTGTTTCTGCTTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCACCTCGAACGATCTTCGCCGTCCACTTCTCGCCCCATCAACGCCACCTCCAAGAATTCCAACCTCCAAGCGGAGGAATCTGAAACAGAGAGTGAAGAGTCCGATGTTAGCGGTTCCGATGGAGATGACACCTCTTGGATCTCTTGGTTCTGCAATCTTAGGGGAAACGAGTTCTTTTGCGAGGTCGATGATGATTATATCCAGGATGACTTCAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTATGATTATGCCCTTGATTTGATTCTCGATGTCGAATCATCCCATGGTGACATGTTCACGGAGGAACAGAACGAGTTGATTGAATCAGCGGCGGAAATGCTTTATGGTTTGATTCATGCCAGATATGTATTGACCAGCAAAGGAATGACTGCCATGCTTGATAAATACAAGAACTATGATTTTGGTAGATGTCCGAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGTCAATCAGACATTCCTAGGGCGAGTACTGTAAAAATATACTGCCCTAGGTGCGAAGATCTTTACTATCCTCGCTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCTCACCTCTTCCTGATGACATATGGACAACTGAAGCCTCAGAAACCATCCCAAGGCTATGTTCCAAGAGTTTTTGGGTTCAAAGTTCACAAGCCATAA 786 0.4567 MYKERGGVSVTVSASKSEDRKRINDVLDKHLERSSPSTSRPINATSKNSNLQAEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMTAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRASTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKVHKP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04066 261 MobiDBLite consensus disorder prediction 15 35 - -
Viun3g04066 261 FunFam Casein kinase II subunit beta 172 246 - -
Viun3g04066 261 FunFam Casein kinase II subunit beta 67 171 - -
Viun3g04066 261 SUPERFAMILY Casein kinase II beta subunit 72 260 IPR035991 GO:0005956|GO:0019887
Viun3g04066 261 ProSitePatterns Casein kinase II regulatory subunit signature. 175 206 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 PRINTS Casein kinase II regulatory subunit family signature 74 90 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 PRINTS Casein kinase II regulatory subunit family signature 193 214 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 PRINTS Casein kinase II regulatory subunit family signature 146 167 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 PRINTS Casein kinase II regulatory subunit family signature 91 105 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 PRINTS Casein kinase II regulatory subunit family signature 221 238 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 SMART CK_II_beta_2 74 257 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 MobiDBLite consensus disorder prediction 1 70 - -
Viun3g04066 261 MobiDBLite consensus disorder prediction 36 53 - -
Viun3g04066 261 PANTHER CASEIN KINASE II SUBUNIT BETA 53 260 IPR000704 GO:0005956|GO:0019887
Viun3g04066 261 Gene3D - 172 246 - -
Viun3g04066 261 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 67 171 IPR016149 GO:0005956|GO:0019887
Viun3g04066 261 Pfam Casein kinase II regulatory subunit 74 257 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04066 Viun-Chr3 48322394 48325198 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04066 K03115 - gmx:100793573 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04066 3 48322394 48325198 Viun3g04066 3 48322394 48325198 ECH
Viun2g02332 2 30604521 30607684 Viun3g04066 3 48322394 48325198 PCT