Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04069 ATGAATGATTACAAAGGAAGAGAAGGAGAAAGTGTTGTTGTTCGGAAGCGAATCAAGGATAAGACGCAGCACCAACAACAACAGCAACAACAACAACATCACCGACAACCCAGTCCTTCCACTGCAAGGCCACACCAGCTTCACCGTCGCTCCGTCTCCCTCCCTAACAATCAACACGAGGAATCTGAAACAGATATCGAAGGATCTGATGTTAGTGTCTCAGAAGGGGATGACTCATCTTGGATCTCATGGTTTTGCAATTTGAAAGGAAATGAATTCTTGTGTGAAGTTGATGATGATTTTGTACAAGACGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCATTGGATTTAATTTTGGACGTTGAGCCTTCCCACGAAATGTTCACAGAGGAACAAAATGAGTTGATTGAATCTGCAGCGGAGATGCTTTATGGTCTGATTCATGCCCGGTACATTTTGACGAGCAAAGGAATGGCTGCAATGCTTCACAAGTTCAAAAACATGGACTTTGGCAGATGTCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTAGGGCAGTCAGATATTCCTAGGTCAAGTAATGTAAAAATATTTTGCCCCAAATGTGAAGACACTTACTACCCAAAGTCCAAGTACCAAGGTAACATGGATGGAGCTTATTTTGGAGCTACATTCCCTCACCTGTTTCTGATGACTTACGGGAATCTGAAGCCACAAAAGCCAGCACAGAACTATGTGCCAAGAGTTTTTGGTTTCAAAGTTCACAAGACCTGA 801 0.4295 MNDYKGREGESVVVRKRIKDKTQHQQQQQQQQHHRQPSPSTARPHQLHRRSVSLPNNQHEESETDIEGSDVSVSEGDDSSWISWFCNLKGNEFLCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVEPSHEMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLHKFKNMDFGRCPRVYCSGQPCLPVGQSDIPRSSNVKIFCPKCEDTYYPKSKYQGNMDGAYFGATFPHLFLMTYGNLKPQKPAQNYVPRVFGFKVHKT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04069 266 PRINTS Casein kinase II regulatory subunit family signature 176 197 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 PRINTS Casein kinase II regulatory subunit family signature 198 219 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 PRINTS Casein kinase II regulatory subunit family signature 151 172 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 PRINTS Casein kinase II regulatory subunit family signature 97 111 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 PRINTS Casein kinase II regulatory subunit family signature 80 96 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 PRINTS Casein kinase II regulatory subunit family signature 226 243 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 SMART CK_II_beta_2 80 262 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 MobiDBLite consensus disorder prediction 1 74 - -
Viun3g04069 266 FunFam Casein kinase II subunit beta 177 251 - -
Viun3g04069 266 FunFam Casein kinase II subunit beta 73 176 - -
Viun3g04069 266 PANTHER CASEIN KINASE II SUBUNIT BETA 59 265 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 MobiDBLite consensus disorder prediction 24 53 - -
Viun3g04069 266 SUPERFAMILY Casein kinase II beta subunit 79 265 IPR035991 GO:0005956|GO:0019887
Viun3g04069 266 Pfam Casein kinase II regulatory subunit 80 262 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 ProSitePatterns Casein kinase II regulatory subunit signature. 180 211 IPR000704 GO:0005956|GO:0019887
Viun3g04069 266 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g04069 266 Gene3D - 177 251 - -
Viun3g04069 266 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 73 176 IPR016149 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04069 Viun-Chr3 48337523 48341137 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04069 K03115 - gmx:100789357 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04069 3 48337523 48341137 Viun2g02332 2 30604521 30607684 PCT