Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02467 ATGGATCGTTTTCCTTCCAGTACCATTATCCCTGACGCGTTCCAAGGGGCCAAAGATGACCTCACCACACAGCTTGCATTGGTTTGGAATCAAATCAAAGCGCCATTGATTGTCCCGTTGCTGAGACTAGCAGTGTTTCTGTGCCTGATCATGTCGGTGATGATGTTCATTGAGAGGGTCTACATGGGCGTTGTCATAACTCTGGTGAAGTTGTTCGGGAGAAAGCCCGAGAAACGTTACAAATGGGAGCCAATGAAGGACGACATAGAGTTGGGAAACTCTTCTTACCCAATGGTTCTCGTTCAAGTCCCCATGTACAACGAAAGAGAGGTTTATCAGCTCTCAATTGGAGCTGCGTGTGGGCTTTCTTGGCCTTCGGATAGGATCATCATACAAATCCTTGATGACTCCACTGACCCAACAATCAAGGAAATGGTGCAGCTTGAATGTCAAAGATGGGCAAGCAAAGGGGTGAACATAAAGTACGAGGTTAGAGACAACAGGAATGGGTACAAAGCAGGGGCTCTCAAAGAAGGCATGAAGCGTAGCTACGTGAAACAATGTGACTGTGTTGCAATCTTTGACGCTGATTTTCAACCAGAGCCTGATTTCTTGTGGCGCACCGTCCCATTCTTAGTGCACAATCCCGAACTAGCCCTCATTCAAGCGCGGTGGAAATTTGTGAATTCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCATTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGATTCAACGGGACTGCGGGAGTGTGGAGAATATCTGCATTGAATGAGGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACTTGGCTGTGCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCTGACTTGAAGGTTAAAAATGAATTGCCAAGCACTCTCAAGGCCTACCGTTACCAGCAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGAAAAATGGTCTTGGAGATCATAAACAACAAGAAAGTGTCATTGTGGAAGAAAATACACGTGATATACAGCTTCTTCTTTGTTCGGAAGGTCGTAGCACACATCAACACCTTTGTGTTCTACTGCATTGTGTTGCCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCTGTTATCACTATTCTAAACGCAGTTGGAACTCCAAGGTCACTCCATTTGCTGGTGTTCTGGATTCTCTTTGAGAATGTTATGTCCCTGCATAGAACCAAGGCAACGATTATTGGTCTACTAGAGGCTAGTCGAGTGAACGAATGGGTTGTCACAGAAAAACTAGGTGATGCTTTGAAGGCTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAAGATTGGAGACAGGATTCACTTGTTAGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGGTGCTATGATGTTATGTTCGGGAAAAACCACTTCTTCATCTTCCTCTTTATCCAATCTCTTGCCTTCTTCATTATGGCATTTGGATATGTTGGCACCATTGTTCCCCAGTCCTAG 1602 0.4532 MDRFPSSTIIPDAFQGAKDDLTTQLALVWNQIKAPLIVPLLRLAVFLCLIMSVMMFIERVYMGVVITLVKLFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKEMVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDCVAIFDADFQPEPDFLWRTVPFLVHNPELALIQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSDLKVKNELPSTLKAYRYQQHRWSCGPANLFRKMVLEIINNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVVVPKWGAVYIPSVITILNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKAKAGGKAPKKPRFKIGDRIHLLELGVAFYLFFCGCYDVMFGKNHFFIFLFIQSLAFFIMAFGYVGTIVPQS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02467 533 Pfam Glycosyl transferase family group 2 191 381 IPR001173 -
Viun1g02467 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 20 528 - -
Viun1g02467 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
Viun1g02467 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Viun1g02467 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 313 IPR029044 -
Viun1g02467 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02467 Viun-Chr1 35039051 35044357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02467 1 532 Miscellaneous Gene Families AT5G03760 79.925 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02467 K13680 - gmx:100782772 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02467 1 35039051 35044357 Viun11g01798 11 33964316 33970150 ECH
Viun1g02467 1 35039051 35044357 Viun1g02467 1 35039051 35044357 ECH
Viun1g02467 1 35039051 35044357 Viun7g00863 7 7822456 7828587 PCT