Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01921 ATGGAGATAAAAAATGTGGAGGAAGGCGTGGAGAAAGGAATCAGAGAGCCACTGGTGGAGAAACCGGACCACCAATTGGTCCATGCAGCAGGCAAAGGGCATCCATGGATGCTTTATTTTTGTACATTCGTTGCAGTGTGTGGTTCTTATGAATTTGGCACTTGTGCTGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGAATTCAATCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCAATCTTGACTTTTGGTGCGATGGTAGGCGCAATAACAAGTGGGCCTATTGCTGATTTTCTTGGACGAAAAGGGGCAATGAGAGTGTCAAGTGCTTTCTGTGTTGGGGGGTGGCTTGCTATTTACTTTTCTGAGGGGCCCGTGCCTCTGGACATTGGGAGGCTAGCAACAGGATATGGAATGGGGGTTTTTTCATATGTGGTTCCTGTCTTTATAGCAGAAATAGCACCAAAAGAACTCCGAGGGACACTGACTACCTTAAATCAGTTCATGATCACTGCTGCTGTGTCAGTGGCATTCACCATTGGAAATGTACTTTCGTGGAGGGCTTTGGCTTTAACTGGCCTCATTCCCACTTCTGTATTGCTACTGGGTTTGTTTTTAATTCCAGAGTCTCCGAGATGGCTAGCAAAGAGAGGACGTCAAAAAGATTTTGAGGCAGCACTGCAAATACTTCGTGGCAAAGAAGCTGATATATCTGAGGAGGCAGAGGAAGTTCAGGACTATATAACTACTTTGGAGCAGCTCCCAAAATCTAGGCTACTGGAATTGTTTCACAGAAGATATTTGCGCTCAGTCACTATAGGAATAGGCCTAATGGTCTGCCAGCAGTTTGGAGGAATCAATGCAATTTGCTTTTATACCAGCAGTATTTTTGAACTAGCAGGATTTTCTCCCGCCATCGGAACTATATCATATGCCTGCCTTCAGGTTGTTGTAACAGGTCTTGGAGCTGTCTTAATCGATAAAACTGGGAGGAAGCCCCTACTTCTATTATCCGGAACGGGATTGGTCGCAGGGTGTACATTTTTAGCAGTTGCATTCTATCTCAAGGTCTACGAGGTGGGTGTTGCAGCTGTCCCAGCACTTGCCGTAATAGGCATTCTGGTCTACATAGGATCATTCTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCTGTCAATATTAAAGGGCAAGCTGGAAGTTTGGCCACATTAACGAACTGGTTTGGTGCATGGTTATGTTCTTATACTTTCAACTTTCTCATGAGCTGGAGTTCCTATGGTACCTTCATTCTTTATGCAGCGATTAATGCATTGGCTATATTATTTATAATTTTGGCGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAACTACAAGCAGCCATTAACTCATAA 1422 0.4437 MEIKNVEEGVEKGIREPLVEKPDHQLVHAAGKGHPWMLYFCTFVAVCGSYEFGTCAGYSSPTQDAIRKEFNLSLAEYSLFGSILTFGAMVGAITSGPIADFLGRKGAMRVSSAFCVGGWLAIYFSEGPVPLDIGRLATGYGMGVFSYVVPVFIAEIAPKELRGTLTTLNQFMITAAVSVAFTIGNVLSWRALALTGLIPTSVLLLGLFLIPESPRWLAKRGRQKDFEAALQILRGKEADISEEAEEVQDYITTLEQLPKSRLLELFHRRYLRSVTIGIGLMVCQQFGGINAICFYTSSIFELAGFSPAIGTISYACLQVVVTGLGAVLIDKTGRKPLLLLSGTGLVAGCTFLAVAFYLKVYEVGVAAVPALAVIGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSLATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIILAVPETKGKSLEQLQAAINS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01921 473 CDD MFS_GLUT6_8_Class3_like 39 466 IPR044775 GO:0008643|GO:0051119
Viun1g01921 473 NCBIfam sugar porter family MFS transporter 36 466 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun1g01921 473 SUPERFAMILY MFS general substrate transporter 31 467 IPR036259 -
Viun1g01921 473 Gene3D MFS general substrate transporter like domains 32 473 IPR036259 -
Viun1g01921 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 37 460 IPR020846 GO:0022857
Viun1g01921 473 FunFam sugar transporter ERD6-like 6 32 471 - -
Viun1g01921 473 ProSitePatterns Sugar transport proteins signature 1. 95 112 IPR005829 GO:0016020|GO:0022857|GO:0055085
Viun1g01921 473 Pfam Sugar (and other) transporter 49 469 IPR005828 GO:0016020|GO:0022857|GO:0055085
Viun1g01921 473 PRINTS Sugar transporter signature 396 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun1g01921 473 PRINTS Sugar transporter signature 373 394 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun1g01921 473 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun1g01921 473 PRINTS Sugar transporter signature 132 151 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun1g01921 473 PANTHER - 33 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01921 Viun-Chr1 30728909 30733023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01921 2 472 Organic Solute Cotransporters AT5G18840 57.983 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01921 K03444 - gmx:100819822 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01921 1 30728909 30733023 Viun6g01550 6 23547207 23552124 ECH
Viun1g01921 1 30728909 30733023 Viun1g01921 1 30728909 30733023 ECH
Viun1g01921 1 30728909 30733023 Viun6g01544 6 23501100 23505422 ECH