Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01550 ATGAACCTATCTCATATTTCCTCTGCTTCTCATAGAACGCAAAATATGGAAAACAAAACCACTGAACCAAACGATTTTACAAGCCCTCTTCTCCCTACAAGTTATGGTGCCCATGATGTTGGCGTTGACTTTCTGGAAAAGAGGCACAACGAAGCTTCTTCCGTTCCAACTACTCTTATACTCACCACCCTCGTTGCTGTTTTTGGTTCATATGTGTTTGGCTCTGCTATTGGGTACTCATCACCTACTCAATCTGGAATCATGCGTGATCTCAATCTCGGAGTGGCCCAGTACTCAATTTTTGGTTCTATATTGACTATTGGAGCTATGATTGGTGCTGTTGTTAGTGGTAGAATAGCAGATTATGCAGGTCGTCGAGTTGCCATGGGGTTCTCCCAGATTTTCTGCATCTTGGGATGGTTTGCCATAACATTCTCAAAGATTGCTTGGTGGCTTTACGTTGGAAGACTGTTGATAGGATGTGGGATTGGCCTTCTATCTTATGTGGTACCTGTTTATGTAGCAGAAATAACACCCAAGAATCTTCGAGGAGCATTCACTGCAGTTCATCAGTTAATGATTTGTTGTGGGATGTCATTAACTTATCTTATTGGAGCATATGCCAATTGGAGAATCTTGGCTCTAATAGGAATTATTCCGTGCCTTTTGCAGCTTCTCTGTCTTCCCTTCATTCCTGATTCTCCCAGGTGGCTGGCCAAGGTGGGTCGGTTGAAAGAGAGTGATTCTGCTTTACAGCATCTCAGGGGTAAGAACGCTGATGTTTATCAAGAGGCCACTGAAATTAGAGATTATACCGAAGCCTTTCAGAAGCAAACAGAAGCTAGCATCATTGGCCTATTCCGAATGCAGTATTTGAAGTCACTTATTGTCGGAGTTGGCTTGATGATACTACAACAATTTGGAGGGATTAATGGCATTGTTTTCTATGCAAACTCTATATTTATATCTTCTGGGTTCTCAGAAAGTTTTGGAACAGTAGCAATCGTCGCTGTTAAGATTCCAATGACAAGTTTAGGAGTACTTCTAATGGATAAATCTGGAAGAAGACCTCTTCTGCTGGTGTCTGCAGTGGGAACATGCTTAGGATGCTTCCTGGCAGCCTTGTCATTCTTCTTGCAGGACTTGCATAAATGGAAGCAAGTTAGCCCCATTATGGCCCTAGTGGGTGTTCTGGTATATGTTGGATTTTACTCTATAGGCATGGGAGCAATTCCGTGGGTTATAATGTCTGAGATATTTCCCATCAACGTGAAGGGCTCTGCTGGAAGCCTTGTGACTTTGGTTAGCTGGTTGTGTTCTTGGATTATATCATATGCTTTTAACTTCCTCATGAATTGGAGTTCAGCAGGAACTTTCTTCATGTTCTCTGCCATATGTGGCTTCACTGTGTTATTCGTAGCAAAACTCGTACCAGAGACCAAGGGACGAACATTAGAAGAAATTCAAGCTTGTATGAGTTCATATTCTTCTGCAAAGAAATGA 1503 0.4218 MNLSHISSASHRTQNMENKTTEPNDFTSPLLPTSYGAHDVGVDFLEKRHNEASSVPTTLILTTLVAVFGSYVFGSAIGYSSPTQSGIMRDLNLGVAQYSIFGSILTIGAMIGAVVSGRIADYAGRRVAMGFSQIFCILGWFAITFSKIAWWLYVGRLLIGCGIGLLSYVVPVYVAEITPKNLRGAFTAVHQLMICCGMSLTYLIGAYANWRILALIGIIPCLLQLLCLPFIPDSPRWLAKVGRLKESDSALQHLRGKNADVYQEATEIRDYTEAFQKQTEASIIGLFRMQYLKSLIVGVGLMILQQFGGINGIVFYANSIFISSGFSESFGTVAIVAVKIPMTSLGVLLMDKSGRRPLLLVSAVGTCLGCFLAALSFFLQDLHKWKQVSPIMALVGVLVYVGFYSIGMGAIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWIISYAFNFLMNWSSAGTFFMFSAICGFTVLFVAKLVPETKGRTLEEIQACMSSYSSAKK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01550 500 ProSiteProfiles Major facilitator superfamily (MFS) profile. 62 481 IPR020846 GO:0022857
Viun6g01550 500 SUPERFAMILY MFS general substrate transporter 49 489 IPR036259 -
Viun6g01550 500 NCBIfam sugar porter family MFS transporter 59 488 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 PRINTS Sugar transporter signature 70 80 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 PRINTS Sugar transporter signature 394 415 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 PRINTS Sugar transporter signature 153 172 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 PRINTS Sugar transporter signature 417 429 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 PRINTS Sugar transporter signature 305 315 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 FunFam sugar transporter ERD6-like 6 53 492 - -
Viun6g01550 500 PANTHER - 55 489 - -
Viun6g01550 500 Pfam Sugar (and other) transporter 63 490 IPR005828 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 CDD MFS_GLUT6_8_Class3_like 60 487 IPR044775 GO:0008643|GO:0051119
Viun6g01550 500 ProSitePatterns Sugar transport proteins signature 1. 116 132 IPR005829 GO:0016020|GO:0022857|GO:0055085
Viun6g01550 500 Gene3D MFS general substrate transporter like domains 51 494 IPR036259 -
Viun6g01550 500 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01550 Viun-Chr6 23547207 23552124 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01550 38 492 Organic Solute Cotransporters AT5G18840 54.783 2.83e-174 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01550 K03444 - gmx:100817150 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01921 1 30728909 30733023 Viun6g01550 6 23547207 23552124 ECH
Viun6g01550 6 23547207 23552124 Viun6g01550 6 23547207 23552124 ECH