Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01544 ATGGACGGTGCTAATAGTGCTGAACCAAGAGAATTTTCAAGTCCTTTGCTTTCCCCAGAAACATTGCAAGCTTATCATGGTAACGATGGAGTTGAGTGTGAGGAAAAGAGGCAGAAAGAAACTTGGTCGGTACCAGCTATTCTTATACTTACCACCCTTGTTGCTGTCTCTGGTTCTTACGTTTTTGGGTCTGCTATTGGATATTCGTCTCCTGCTCAAAATGGAATCATGGATGATCTCAATCTCGGCGTGGCTGAGTATTCGATTTTTGGATCAATACTGACGATTGGAGCAATGATTGGGGCTATCATAAGTGGTAGAATAGCAGATTACGCAGGTCGAAGAGCTGCTATGGGTTTCTCCGAAGTATTCTGCATCTTGGGATGGCTTGCCATAGCATTCTCAAAGGTTGGTTGGTGGCTTTACATTGGAAGATTTTTGGTAGGATGTGGAATGGGCCTTCTATCTTATGTGGTTCCAGTTTATGTAGCTGAAATAACACCCAAGAATCTCCGAGGGGGATTCACCACAGTTCATCAGTTAATGATTTGTTGTGGGGTATCATTAACTTATCTTATTGGAGCGTTCTTAAATTGGAGGATTTTGGCTCTAATAGGAACTATTCCCTGTCTCGTACAACTTTTGGGTCTATTCTTCATTCCCGAATCTCCTAGATGGCTGGCAAAATTTGGTCACTGGGAAAGGAGTGAATCTGTTCTACAGAGTCTTAGAGGAAAGAATGCTGATGTTTCTGAAGAGGCCACTGAAATTAGAGATTTTACCGAAGCCCTTCAGAGCGAAACAGAAGCTACCATTTTTGGCTTATTTCAGTTGCAGTATTTGAAGTCACTTACTGTAGGAGTTGGTCTTATGATACTGCAACAGTTTGGAGGGGTTAACGGCATTGCTTTTTATGCAAGTTCTATATTCATCTCTGCTGGATTTTCGGGAAGTATTGGAATGATAGCAATGGTTGCAGTTCAGATCCCAATGACAGCTTTGGGAGTGCTTTTGATGGATAAATCTGGGAGACGACCACTTCTGCTGGTCTCTGCTTCAGGAACATGCTTAGGATGCTTCCTTGCAGCCCTATCATTCTTCTTGCAGGACCTACATAAATGGAAGGAAGCCAGTCCCATTCTGGCACTTGTCGGTGTACTGGTATATACAGGATCATTCTCTCTTGGCATGGGGGGAATCCCCTGGGTTATAATGTCTGAGATATTTCCCATTAATGTGAAAGGCTCTGCAGGAAGTCTTGTGACTTTGGTTAGCTGGTTGTGTTCTTGGATTGTGTCATATGCTTTTAACTTTCTCATGAGTTGGAGTTCCGCAGGAACTTTCTTCATCTTCTCTGCCATATGTGGCTTCACGGTTCTGTTCGTGACAAGACTGGTGCCAGAGACCAAGGGGCGTACACTAGAAGAAATTCAAGCATCCCTCAAGAGATGA 1452 0.4339 MDGANSAEPREFSSPLLSPETLQAYHGNDGVECEEKRQKETWSVPAILILTTLVAVSGSYVFGSAIGYSSPAQNGIMDDLNLGVAEYSIFGSILTIGAMIGAIISGRIADYAGRRAAMGFSEVFCILGWLAIAFSKVGWWLYIGRFLVGCGMGLLSYVVPVYVAEITPKNLRGGFTTVHQLMICCGVSLTYLIGAFLNWRILALIGTIPCLVQLLGLFFIPESPRWLAKFGHWERSESVLQSLRGKNADVSEEATEIRDFTEALQSETEATIFGLFQLQYLKSLTVGVGLMILQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVAVQIPMTALGVLLMDKSGRRPLLLVSASGTCLGCFLAALSFFLQDLHKWKEASPILALVGVLVYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWIVSYAFNFLMSWSSAGTFFIFSAICGFTVLFVTRLVPETKGRTLEEIQASLKR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01544 483 Pfam Sugar (and other) transporter 52 479 IPR005828 GO:0016020|GO:0022857|GO:0055085
Viun6g01544 483 SUPERFAMILY MFS general substrate transporter 37 478 IPR036259 -
Viun6g01544 483 CDD MFS_GLUT6_8_Class3_like 49 476 IPR044775 GO:0008643|GO:0051119
Viun6g01544 483 FunFam sugar transporter ERD6-like 6 42 481 - -
Viun6g01544 483 ProSiteProfiles Major facilitator superfamily (MFS) profile. 51 470 IPR020846 GO:0022857
Viun6g01544 483 PANTHER - 42 478 - -
Viun6g01544 483 ProSitePatterns Sugar transport proteins signature 1. 105 121 IPR005829 GO:0016020|GO:0022857|GO:0055085
Viun6g01544 483 Gene3D MFS general substrate transporter like domains 41 483 IPR036259 -
Viun6g01544 483 PRINTS Sugar transporter signature 383 404 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01544 483 PRINTS Sugar transporter signature 59 69 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01544 483 PRINTS Sugar transporter signature 142 161 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01544 483 PRINTS Sugar transporter signature 294 304 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01544 483 PRINTS Sugar transporter signature 406 418 IPR003663 GO:0016020|GO:0022857|GO:0055085
Viun6g01544 483 NCBIfam sugar porter family MFS transporter 84 477 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01544 Viun-Chr6 23501100 23505422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01544 34 412 Organic Solute Cotransporters AT1G54730 70.449 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01544 K03444 - gmx:100786465 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01921 1 30728909 30733023 Viun6g01544 6 23501100 23505422 ECH
Viun6g01544 6 23501100 23505422 Viun6g01544 6 23501100 23505422 ECH