Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02163 ATGTCTTCTGCTGGTGTCACCATCCTTAACCCTGTTCCAAGGGAACTGTTACTGTCTTCAAATGGATACCATACTCCACTGCACTTGTCATTGGATCATGAGTTTATTTTCATATTTCTCTCCCATTCTGGATCCTTGACTCCGATGCGAGTCCTTCCATACGATACCATTGAGTCCGTGAAACTCAAAATCCAAAAGGCTGAGGGGCTTCCTTCATTGACAAACAAACAAAAGTTGGTTTGTGATGGACGAGAGCTAGCTCGGAGCAATTCCCTGCTGAAGGACTATGGGGTTACTGAAGGAAATGTTTTGCATTTGGTGATTAGGCTGTCGGATCTCCAGACAATCAGTGTGAGAACCTCTTCTGGAAAAGACTTTACCTTTCAGGTGGAGAGATGCAGAGATGTTGGGTATGTTAAGCAGCAGATTGCAAAAAAGGAGAAGCGCTTTGCTGATCCTGAACATCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGAAGATCAGAGGGTTATTGATGATATCTGTAGTAAATATAATGATGCAGTGATTCATCTTTTTGTTAGAGTGAAATATGCAGAAGTTAGGACAGGACAAGATGAGTTGTCGGTCAATGTGAAGGAGTTGAATGGTACAGAAGATTACGATGTTAGTGAAAATAATTGTAGGAGAGAACGTGATGTTAGTAAAGAAGAGGAGGGAAGGGAGGATGCAGCCATCGAGCCAAGTGTGCCGAGGAAGGCTCTTGATAGAGATCTTTTGGAGCCTGTCATTGTTAATAAGAAAATTGAATTGGCTTCAGAGGTTTGGAATATGATAAACATGACATACGAAGGACTAAACAGTGGAAATTATCCAATCAGATCTGCAGAGGGTACAGGGGGAGCTTACTTTATGCTTGATTCAACCGGGCAAAACTATGTATCTGTTTTCAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTACCTTTCTCAGCAGATGGTGAAGGCTTAAAGAAAGGTACTAGAGTTGGTCAGGGAGCGTTCAGGGAAGTTGCAGCTTATATTTTGGACCATCCAATGAGTGGTCATCGATCATTATTTGGTGACCAGAAGGGCTTTGCTGGGGTTCCTCCAACTGTTATGGTTAAGTGCTTGCATGAAGGATTTAACCATCCTGGGGAATTGACTACTAAGCTTGGCTCCTTGCAAATGTTCATGGAGAACAATGGAAGCTGCGAGGATATGGGTCCTGGGGCTTTTCCAGTGAAGGAAGTGCATAAAATTACTGTTCTGGACATGAGGCTCGCAAATGCAGATAGACATGCTGGCAATATTTTGATCGGCAAAGAGGAGGAAAATGGCCAGGCTGTGTTGATTCCAATTGATCATGGATACTGCTTGCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCCCAAGCACGCCAACCATACTCCCCTGAGATCATTGATTATATAAGGTCACTGAATGCCGATGAAGACATTGCCCTTTTGAAGTTTCATGGATGGAATCTGCCAGTAGAATGTGCACGCACCCTTCAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGAGAGAGGAATGACCCCTTTTGGCATTGGAAGCCTTATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAGGGAATTGTAAAGGCAGCTCTGGATTCTGTTCTTCCTGGCACGAGTGAAGAAACATTTCTGGATGCTGTATCTGAAATCATGGACCAGCACCTTGATGAGATTCTGTCATAG 1782 0.4377 MSSAGVTILNPVPRELLLSSNGYHTPLHLSLDHEFIFIFLSHSGSLTPMRVLPYDTIESVKLKIQKAEGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNVLHLVIRLSDLQTISVRTSSGKDFTFQVERCRDVGYVKQQIAKKEKRFADPEHQEVVCNGELLEDQRVIDDICSKYNDAVIHLFVRVKYAEVRTGQDELSVNVKELNGTEDYDVSENNCRRERDVSKEEEGREDAAIEPSVPRKALDRDLLEPVIVNKKIELASEVWNMINMTYEGLNSGNYPIRSAEGTGGAYFMLDSTGQNYVSVFKPIDEEPMAVNNPRGLPFSADGEGLKKGTRVGQGAFREVAAYILDHPMSGHRSLFGDQKGFAGVPPTVMVKCLHEGFNHPGELTTKLGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGKEEENGQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIRSLNADEDIALLKFHGWNLPVECARTLQISTMLLKKGVERGMTPFGIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEETFLDAVSEIMDQHLDEILS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02163 593 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Viun10g02163 593 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Viun10g02163 593 SUPERFAMILY Ubiquitin-like 17 110 IPR029071 -
Viun10g02163 593 Gene3D - 34 114 - -
Viun10g02163 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
Viun10g02163 593 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Viun10g02163 593 SUPERFAMILY Protein kinase-like (PK-like) 428 591 IPR011009 -
Viun10g02163 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 45 566 IPR044571 -
Viun10g02163 593 MobiDBLite consensus disorder prediction 216 242 - -
Viun10g02163 593 CDD Ubl_ubiquitin_like 116 186 - -
Viun10g02163 593 Gene3D - 115 190 - -
Viun10g02163 593 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Viun10g02163 593 Pfam Ubiquitin family 39 110 IPR000626 GO:0005515
Viun10g02163 593 Pfam Phosphatidylinositol 3- and 4-kinase 291 539 IPR000403 -
Viun10g02163 593 SMART ubq_7 114 188 IPR000626 GO:0005515
Viun10g02163 593 SMART ubq_7 36 109 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02163 Viun-Chr10 36459715 36462942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02163 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 54.348 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02163 - - gmx:100815111 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02163 10 36459715 36462942 Viun9g02184 9 31333661 31337705 ECH
Viun10g02163 10 36459715 36462942 Viun10g02163 10 36459715 36462942 ECH
Viun6g01798 6 25186926 25189857 Viun10g02163 10 36459715 36462942 PCT