Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01798 ATGTCTTCAGCCGGTGTCAGTACTCTTAGCGTGGTTCCCCCTGAGCCATTGTTGTCACCAAAGGCATTCCCTTTCCCGTCACACTTGTCTTTGGAAGATAAATCTATTTTCATATATCTCTCCTTTTCTGGTTCGTTGACTCCAATCCGTGTTATGGAATGGGATACCATTGAGTCTGTGAAGTTCAAAATCCAAAGGTGTGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAACTCGCGCGGAGTGATTCTCTGCTCAAGGACTATGGAGTAACCGGTGGAAATGTTTTGCATTTGATAATCAAACTGTCAGATGTTCAGGTCATCAATGTGAAAACTTCTAGCGGGAAGGAGTTCTCGTTTCAGGTTGAAAGAGGTCGGGATGTTAGGTACATAAAGCGGCGAATTGCCAAAAGAGAGAAACAGTTTGATGATCCTGAGGAACAGGAGCTTGTGTGCAATGGGGAAAGGCTTGATGACCAGAGGCTTATTGATGATATCTGCTGCAAGCATAATGATGCTGTGGTACACCTGTTTGTGAGAAAAAAGAATGTTAAAATTCAGAGGAGACCCCTTGAGTTGTCCATTTTAGCAACAGATTTGACTGATGAGAAGAAAAACGATGTCAATGGAGAGACATGCAGGAGGAATTATGATGTTGGTAAAGAAGATATTATTAGAAAGTCTGATGCCATTCAAAGAACTGTGCCGAGAAAGCCTCCCGACAGAGATTTTATTTTGGAGCCGGTTATTATTAACCCTAAAATTGAATTAGCTCAATCTATTTGGAATATGGTGAATTCTACATATGATGGACTTGACAGTGGAAAATATCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAGCGGGGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGACGAAGAACCAATGGCCGTGAATAACCCTCGAGGTCTTCCATTGTCATTAGATGGTGAAGGCTTAAAAAAGGGTACAAGGGTTGGTCAAGGTGCATTCAGGGAAGTTGCAGCCTATGTTCTAGATCATCCATTGAGTGGGCGCCGCAAATTATTTGGTGATGAGACAGGCTTTGCAGGTGTCCCTCCAACATTGATGACCAAGTGCTTGCATAAAGCATTTAACTATCCTAGAGAATTGACTCCTAAGATTGGTTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCTGGGGCTTTCCCAGTAAAGGAAGTACATAAAATTTCTGTTCTGGACATAAGACTGGCAAATGCAGATCGGCATGCTGGGAATATTTTGATCAGCAAAGAGGAAAGCAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCTACAAGCTTTGAAGATTGTACCTTTGAGTGGCTTTACTGGCCCCAAGCTTGCCAGCCATACTCCCCAGAAACTATTGAGTACATAAAGTCACTGGATGCTGAAGAAGATATTGCCCTTTTAAAATTTCACGGATGGGATCTGCCGGTTGAATGTGCTCGCACTCTCAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAAAGAGGGTTGACCCCCTTCACCATTGGAAGCATGATGTGCAGGGAATCCTTGAACAAGGAGTCTGTGATTGAAGAAATAATACAAGAAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCCCAAATCATGGATCTGCGCCTCGCTGAGATTGTCAGATCTCGTTTATAA 1794 0.4287 MSSAGVSTLSVVPPEPLLSPKAFPFPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDSLLKDYGVTGGNVLHLIIKLSDVQVINVKTSSGKEFSFQVERGRDVRYIKRRIAKREKQFDDPEEQELVCNGERLDDQRLIDDICCKHNDAVVHLFVRKKNVKIQRRPLELSILATDLTDEKKNDVNGETCRRNYDVGKEDIIRKSDAIQRTVPRKPPDRDFILEPVIINPKIELAQSIWNMVNSTYDGLDSGKYPIRSAEGTGGAYFMLDSAGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGRRKLFGDETGFAGVPPTLMTKCLHKAFNYPRELTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKISVLDIRLANADRHAGNILISKEESNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQACQPYSPETIEYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFTIGSMMCRESLNKESVIEEIIQEALDSVLPGTSEATLLDAVSQIMDLRLAEIVRSRL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01798 597 Gene3D - 115 201 - -
Viun6g01798 597 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Viun6g01798 597 Gene3D - 35 109 - -
Viun6g01798 597 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Viun6g01798 597 SUPERFAMILY Ubiquitin-like 108 190 IPR029071 -
Viun6g01798 597 SMART ubq_7 114 188 IPR000626 GO:0005515
Viun6g01798 597 SMART ubq_7 36 109 IPR000626 GO:0005515
Viun6g01798 597 SUPERFAMILY Ubiquitin-like 42 113 IPR029071 -
Viun6g01798 597 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Viun6g01798 597 CDD Ubl_ubiquitin_like 116 186 - -
Viun6g01798 597 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Viun6g01798 597 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Viun6g01798 597 SUPERFAMILY Protein kinase-like (PK-like) 427 588 IPR011009 -
Viun6g01798 597 Pfam Phosphatidylinositol 3- and 4-kinase 292 542 IPR000403 -
Viun6g01798 597 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 46 567 IPR044571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01798 Viun-Chr6 25186926 25189857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01798 33 589 Acyl Lipid Metabolism Gene Families AT5G24240 55.851 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01798 - - gmx:100791631 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01798 6 25186926 25189857 Viun10g02163 10 36459715 36462942 PCT