Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00368 ATGGGGGAAGCGACAGAGAGGTATGCAGTTGTGACAGGAGCAAATAAAGGGATTGGATTAGAGATAGTTAGGCAGTTAGCTTCAGAAGGAATAAAGGTTGTACTCACTGCAAGGAATGAAGAGAGGGGTCTTCAAGCATTCGAAACACTCAAAGCCTCTCCTCTTTCTCATCTACTCTTCTTTCATCAGCTAGATGTCGCTCATGCTACAAGTGTAGCTTCTTTTGCAGATTTTATCAAATCCAAATTTGGTAAACTTGATATTCTGGTTAATAATGCGGGAATCAGTGGAGTTGTAATTGAAGACAGAGACTTAATCACTACAGTCCTCGTGAATCGTGGGGTGACATCTGATGAGGAAGGAACAAGGGCAATGACTCAAACATATGAGTTAGCAGAAGAATGCTTGCAAATAAATTACTATGGCGCTAAAATAACTATTGAATCCCTTATGCCACTCCTGCAATTATCTGACTCGCCAAGAATTGTGAATGTATCATCCACTCTAGGGCAGTTAGAGAGTTTCCCTAAAGAATCATGGGCAAGAGGAGTGTTCAGCGATGTTGATAACCTGACAGAAGAGAAAATGGATGAAATAGTGAAGAAATTTCTAAGTGATTTCAAAGAAGGTACATTAGAGAGTAAAGGGTGGCCAAAGTATCTAGGTGCATATATTGTATCGAAAGCTGCTATGAATGGGTACACGAGAATCCTTGCTAGGAAACATCCATCATTCTGCATAAACAGTGTTTGCCCTGGTTATGTGAAGACAGATATAACATCAAGCACTGGTTTTCTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTCAAGCTTGCACTTCTTCCCAATGGCTCTCCATCTGGTCTCTTCTATTTCAGAACTGATGTCGCTTCCTTTTGA 900 0.4089 MGEATERYAVVTGANKGIGLEIVRQLASEGIKVVLTARNEERGLQAFETLKASPLSHLLFFHQLDVAHATSVASFADFIKSKFGKLDILVNNAGISGVVIEDRDLITTVLVNRGVTSDEEGTRAMTQTYELAEECLQINYYGAKITIESLMPLLQLSDSPRIVNVSSTLGQLESFPKESWARGVFSDVDNLTEEKMDEIVKKFLSDFKEGTLESKGWPKYLGAYIVSKAAMNGYTRILARKHPSFCINSVCPGYVKTDITSSTGFLTVEEGAASPVKLALLPNGSPSGLFYFRTDVASF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00368 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vimu9g00368 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vimu9g00368 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Vimu9g00368 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Vimu9g00368 299 Gene3D - 3 299 - -
Vimu9g00368 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 296 - -
Vimu9g00368 299 FunFam (+)-neomenthol dehydrogenase 2 299 - -
Vimu9g00368 299 Pfam short chain dehydrogenase 8 173 IPR002347 -
Vimu9g00368 299 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
Vimu9g00368 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Vimu9g00368 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vimu9g00368 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vimu9g00368 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00368 Vimu-Chr9 4373994 4376594 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00368 10 264 Acyl Lipid Metabolism Gene Families AT1G24360 22.093 5.03e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00368 K15095 - gmx:100801677 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00368 9 4373994 4376594 Vimu9g00368 9 4373994 4376594 ECH
Vimu6g00454 6 5337752 5346063 Vimu9g00368 9 4373994 4376594 PCT
Vimu9g00368 9 4373994 4376594 Vimu6g00455 6 5349686 5352687 PCT