Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00454 ATGGCCTATGCACAAGGTTTTGTTCTCAATTTCAAACTGGGTTTTGTATCTTTTAAGTTCCAAAACCCCTCCATTGTTGCTACAAAGCATGGTTCAATGAGGGGTCTTATGGCTCTGAAGTCGGTGGAACTAGACCAATTTGTGACCAGTGATGATGAGAGGATGAAACAGGAGAAGGCAGTTCATCAAGATTCAGCATCTATGATAGAACCAAAACCAAGGTATGCTGTTGTAACTGGGGCAAACAAAGGGATAGGGTTAGAGACTGTTAAGCAGTTGGCCTCAAATGGAGTGAAGGTGGTGCTCACTGCCAGAGATGAGAAAAAAGGTCATGAAGCCATTGAGATATTGAAAGAATGTGGTATCTCTGAGTTGGTGGTTTTTCACCAGCTTGATGTCACTCACTCTGCTAGTATTCATTCACTGGTGGAGTTTCTCAAGACACAGTTTGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAGTGGTGTCAATCCATATGAAATGCAAGGGTCAACAATTAACTGGAGGGAACTTACTCAAACTTCTGAAATGGCAGAAAAGTGTCTAAGAACAAACTATTATGGTGCAAAGGAAACAACTGATGCATTTCTTCCCCTTTTGAAACTATCCAACTCACCTAGGATTGTTAATGTTTCCTCCCAAGCAGGGTTGTTAAAGGGGATAGCAAACAAAATGGCTAAAGGGGTGTTTGATGATGCTGAAAATCTTACAGAAGATAGAATAGATGAGGTACTGAAAGAGTTTATGAAAGACTTTGAAGAAGGTTCATTCAGAAACAAAGGTTGGCCAACCTTCTTATCTGCCTATATGGTTTCAAAAGCAGCCGTGAATTCATACACAAGAATTCTAGCAAGGAAATTTCCAAACTTTTGCATCAATTGTGTGTGTCCTGGTTTTGTGAAAACAGACATAAACAGAAACACTGGTTTCTTATCAGTTGAGGAAGGTGCTGCTAGTGTTGTGAGATTAGCATTGCTTCCCAATGGTTCCCCTTCTGGCCTCTTCTATAGTAGGGAAGAAATGTATGCTGTTGTAACTGGAGCAAATAAAGGGATAGGGTTTGAGACTGTTAAACAGTTGGCCTCAAATGGAGTGAAGGTGGTGCTCACTGCCAGAGATGAGAACAGAAGCCAAGAAGCCATTGCGAAATTCAAAGAGTATGGTCTCTCTGATTTGGTGACTTTTCACCAGCTTGATGTCACTCACTCTGCTAGTATTCATTCTCTAGTAGAGTTTGTTAAGACACAGTTTGGAAAACTTGATATTTTGGTGAACAATGCAGGAATAAGTGGTATCAATCTGGATGGAGTGGAGGAGGGATCAGCATTTAACTGGGAGGAACAAGATCAAACTTATGAGATGGTTGAAGAGTGCCTAACAACAAACTACTATGGTGCAAAGAAAGTAACTGAGGCATTTCTTCCCCTTCTGCAATTATCCAACTCTCCTAGGATTGTGAATGTTTCCTCCCAAGCAGGATTGTTAAAGAACATAGTAAACAAATGGGCTAAAGGGGTGCTTAATGATGCTGAAAATCTTACAGAAGAGAAAATAGACGAGGTGCTCAAAGAGTTTACCAAAGACTTCAAAGAAAATTCCTTAGAAACTAAAGGCTGGCCAACCTTCTGGTCTGCCTATTTTGTCTCAAAAGCAGCCATGAATTCATACACAAGGATTCTAGCAAAGAAGCATCAAAACATGATTATTAACAGTCTGTGTCCCGGTTTTGTGAAAACAGACATCAACAAAAACTGTGGCATCTTATCAGTTGATGAAGGTGCTGTTAGTGTTGTGAGATTGGCACTTTTTCCTGATGGTTCCCCTTCTGGCCTTTTCTATGTTAGGCAAGAATTGTCCAACTTTTAA 1893 0.4052 MAYAQGFVLNFKLGFVSFKFQNPSIVATKHGSMRGLMALKSVELDQFVTSDDERMKQEKAVHQDSASMIEPKPRYAVVTGANKGIGLETVKQLASNGVKVVLTARDEKKGHEAIEILKECGISELVVFHQLDVTHSASIHSLVEFLKTQFGRLDILVNNAGISGVNPYEMQGSTINWRELTQTSEMAEKCLRTNYYGAKETTDAFLPLLKLSNSPRIVNVSSQAGLLKGIANKMAKGVFDDAENLTEDRIDEVLKEFMKDFEEGSFRNKGWPTFLSAYMVSKAAVNSYTRILARKFPNFCINCVCPGFVKTDINRNTGFLSVEEGAASVVRLALLPNGSPSGLFYSREEMYAVVTGANKGIGFETVKQLASNGVKVVLTARDENRSQEAIAKFKEYGLSDLVTFHQLDVTHSASIHSLVEFVKTQFGKLDILVNNAGISGINLDGVEEGSAFNWEEQDQTYEMVEECLTTNYYGAKKVTEAFLPLLQLSNSPRIVNVSSQAGLLKNIVNKWAKGVLNDAENLTEEKIDEVLKEFTKDFKENSLETKGWPTFWSAYFVSKAAMNSYTRILAKKHQNMIINSLCPGFVKTDINKNCGILSVDEGAVSVVRLALFPDGSPSGLFYVRQELSNF 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00454 630 Pfam short chain dehydrogenase 352 507 IPR002347 -
Vimu6g00454 630 Pfam short chain dehydrogenase 75 229 IPR002347 -
Vimu6g00454 630 CDD carb_red_PTCR-like_SDR_c 351 630 IPR045313 GO:0016616
Vimu6g00454 630 FunFam (+)-neomenthol dehydrogenase 350 630 - -
Vimu6g00454 630 FunFam (+)-neomenthol dehydrogenase 69 349 - -
Vimu6g00454 630 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 74 339 IPR036291 -
Vimu6g00454 630 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 215 223 IPR002347 -
Vimu6g00454 630 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 162 IPR002347 -
Vimu6g00454 630 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 278 297 IPR002347 -
Vimu6g00454 630 CDD carb_red_PTCR-like_SDR_c 74 349 IPR045313 GO:0016616
Vimu6g00454 630 PRINTS Glucose/ribitol dehydrogenase family signature 75 92 IPR002347 -
Vimu6g00454 630 PRINTS Glucose/ribitol dehydrogenase family signature 278 297 IPR002347 -
Vimu6g00454 630 PRINTS Glucose/ribitol dehydrogenase family signature 151 162 IPR002347 -
Vimu6g00454 630 PRINTS Glucose/ribitol dehydrogenase family signature 209 225 IPR002347 -
Vimu6g00454 630 PRINTS Glucose/ribitol dehydrogenase family signature 297 314 IPR002347 -
Vimu6g00454 630 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 74 349 - -
Vimu6g00454 630 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 352 616 IPR036291 -
Vimu6g00454 630 Gene3D - 351 630 - -
Vimu6g00454 630 Gene3D - 70 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00454 Vimu-Chr6 5337752 5346063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00454 345 591 Miscellaneous Gene Families AT2G29150 30.800 2.53e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00454 - K15095 mtr:25498884 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00454 6 5337752 5346063 Vimu6g00454 6 5337752 5346063 ECH
Vimu6g00454 6 5337752 5346063 Vimu9g00368 9 4373994 4376594 PCT
Vimu9g00372 9 4399331 4401065 Vimu6g00454 6 5337752 5346063 PCT