Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00455 ATGAAAAGGCTACGTAATCGAGATTCACAAAAAGAATACAGTATACAAGAAAAGTATGCTGTTGTGACAGGAGCAAATAAAGGGATTGGTTTTGGGGTGTGTAAGAAGTTGGCTTCAAGTGGGGTTGTGGTGGTGCTGACAGCCAGAGATGAGGAGAGGGGCTTGAAAGCAATTCAAACACTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCATCAGCTTGATGTGGATGATCCTGCTAGTGTTGCTACCTTGGCTCATTTCATCAAAACCAAATTTGGGAAACTTGATATCTTGGTGAATAATGCAGCTGTTACTGGGGGTAAATTATTAGATGGTGAAGCTTTACTTAGAATGAGAAATGGTGAAAAAGTTGATTGGAGTGAAATAGGGTATGGAACTTTTGAGTTAGTTGAACAATGTGTGCAAACAAACTTCTATGGTGTGGAAAGGGTAACAGAAGCTCTTATTCCTCTTCTACAGTTGTCTACTTCACCAAGAATTATCAATATTTCCTCAAGAGCAGGGCTCTTGAAGAACATACCTAATGAGTGGGCTAGAACAGTGTTCAGTGACATTGAAAACCTTACAAGAGAAAAAATAGACAGAGTACTGAAAGAGTTTCAGAAAGATTTCAAAGAGGGATCATTGGAAATCAAGGGTTGGCCAGCTTTTGCTCCTGCTTATACAATGTCAAAAGCAGCTTTGAATGCTTACACAAGAGTTATGGCCAAGAAAATTCCACATTTTCACATAAACTCTGTGTGCCCTGGCTTTGTCAAGACTGATATGAACAACAACACTGGAGAATTAAGCATTGATGAAGGTTCTGAAACTCCTGTAATGTTGGCACTGTTGCCAAATAATCTTCCTTCTGGTTGCTTCTTTTATCAGGGTCAAGTAATACCCTTTTGA 918 0.3943 MKRLRNRDSQKEYSIQEKYAVVTGANKGIGFGVCKKLASSGVVVVLTARDEERGLKAIQTLKEFGLSDLLVFHQLDVDDPASVATLAHFIKTKFGKLDILVNNAAVTGGKLLDGEALLRMRNGEKVDWSEIGYGTFELVEQCVQTNFYGVERVTEALIPLLQLSTSPRIINISSRAGLLKNIPNEWARTVFSDIENLTREKIDRVLKEFQKDFKEGSLEIKGWPAFAPAYTMSKAALNAYTRVMAKKIPHFHINSVCPGFVKTDMNNNTGELSIDEGSETPVMLALLPNNLPSGCFFYQGQVIPF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00455 305 CDD carb_red_PTCR-like_SDR_c 18 305 IPR045313 GO:0016616
Vimu6g00455 305 Gene3D - 7 305 - -
Vimu6g00455 305 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 290 IPR036291 -
Vimu6g00455 305 Pfam short chain dehydrogenase 18 180 IPR002347 -
Vimu6g00455 305 Pfam Enoyl-(Acyl carrier protein) reductase 221 270 - -
Vimu6g00455 305 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 217 245 IPR020904 GO:0016491
Vimu6g00455 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Vimu6g00455 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 IPR002347 -
Vimu6g00455 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 230 249 IPR002347 -
Vimu6g00455 305 FunFam (+)-neomenthol dehydrogenase 13 305 - -
Vimu6g00455 305 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Vimu6g00455 305 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Vimu6g00455 305 PRINTS Glucose/ribitol dehydrogenase family signature 161 177 IPR002347 -
Vimu6g00455 305 PRINTS Glucose/ribitol dehydrogenase family signature 230 249 IPR002347 -
Vimu6g00455 305 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Vimu6g00455 305 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 18 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00455 Vimu-Chr6 5349686 5352687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00455 15 271 Acyl Lipid Metabolism Gene Families AT1G24360 23.846 1.55e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00455 K15095 - gmx:100789626 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00455 6 5349686 5352687 Vimu6g00455 6 5349686 5352687 ECH
Vimu6g00455 6 5349686 5352687 Vimu9g00365 9 4358708 4360784 PCT
Vimu9g00368 9 4373994 4376594 Vimu6g00455 6 5349686 5352687 PCT