LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g03647	ATGGCCACAGCTCAGGAAAAAGCGACGCCAAATAATCTCAGTAACAACCCCACTGCTTCTAATTCCTCCGCAGTTCCCTCCTCCTGGGCCCACCCCGCCGCCGATCCCTTCCGAAACAGACCCCCCGTCTCCGCCCTCATGTCCGCCGTCGATTCCTTTCCCGATCCTCCTCCCAAAACCACCTCCACCACCAAAGGTATTCCAGTCATGATGAGAGCTCAAACTTGCCACCCTTTGGATCCACTGTCAGCTGCTGAAATATCAGTGGCTGTAGCTACAGTTCGGGCTGCTGGGGCAACCCCTGAGGTGAGGGATAGCATGCGCTTTGTTGAAGTAGTACTGGTAGAACCAGATAAGCAAGTTATTGCATTAGCAGATGCATATTTCTTCCCTCCTTTCCAGCCTTCTTTGCTTCCCAGGACTAAAGGAGGACCTGTGATTCCTTCTAAACTTCCCCCAAGGAAAGCACGATTGGTTGTTTACAACAAAAGGTCAAATGAGACTAGCATATGGATTGTTGAACTCAGGGAAGTGCATGCAGCAACTCGAGGTGGTCACCATAGAGGCAAAGTTATTTCTTCCAAAGTCATTCCAAATGTTCAGCCACCAATGGATGCTGTGGAGTATGCTGAATGTGAAGCTGTTGTGAAGGACTTCCCTCCATTTCGAGAAGCAATGAAGAGAAGAGGGATTGACGACATGGATCTCGTGATGGTGGATGCATGGTGTGTAGGATATCATAGCGAAACAGACGCCCCTAGCCGCAGGCTTGCTAAACCACTAATCTTTTGCAGAACTGAAAGTGACTGCCCCATGGAAAATGGCTATGCTCGTCCAGTTGAAGGAATCTATATACTTGTTGACATGCAAAATATGGAAATTCTTGAGTTTGAAGATCGAAAACTGATCCCTCTTCCACCTGCTGATCCACTGAGAAATTATACTTCTGGTGAAACTCGGGGAGGAGTTGATAGAAGTGATGTAAAGCCATTACAGATTATTCAGCCTGAAGGTCCAAGTTTTCGTGTCAACGGGCACTTCATTCAGTGGCAGAAGTGGAACTTTCGTATTGGTTTTACACCTAGAGAAGGTTTGGTTATTTATTCTGTAGCCTATATTGATGGAAGTCGAGGAAGAAGACCAGTGGCCCACAGATTGAGTTTTGTTGAGATGGTGGTTCCTTATGGAGATCCAAACGATCCTCACTATAGGAAGAATGCTTTTGATGCAGGAGAAGATGGTTTGGGTAAAAATGCTCATTCTCTCAAGAAGGGTTGTGATTGTTTAGGCTATGTCAAATATTTCGATGCTCACTTCACAAACTTTACTGGAGGTGTTGAGACAATAGAGAATTGTGTCTGCTTGCATGAAGAGGATCATGGTATTTTATGGAAGCATCAAGACTGGAGAACAGGTTTAGCTGAAGTTCGACGGTCTAGAAGGCTGACAGTATCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTCTATCAGGCAAGTTGCATTCATGTTTTTGTGGATGGTAAAATAGAAGCTGAGGTCAAGCTCACGGGAATTCTCAGTTTAGGAGCGTTGCAACCAGGCGAAACTCGAAAATATGGCACAACCATTGCACCTGGATTATATGCGCCTGTCCACCAACACTTTTTTGTTGCTCGTATGGACATGGCTGTTGATTGCAAGCCTGGTGAAGCATTTAATCAGGTTGTTGAGGTGGATGTCAAAGTTGAACAGCCAGGAGAGAATAATGTTCACAACAACGCATTTTATGCAGAGGAAAAACTGCTTAAATCAGAATTGGAAGCAATGCGTGATTGTAACCCTTTATCTGCTCGACATTGGATTGTGAGAAACACCAGGACGGTAAACCGAACCGGGCAGCTAACAGGATACAAGTTGGTACCTGGTTCAAATTGTTTACCCTTGGCTGGTTCAGAGGCCAAGTTTCTGAGAAGAGCAGCTTTCTTGAAGCACAATCTTTGGGTCACTCCTTATGTTCCTGACGAAATGCAGCCTGGAGGAGAGTTCCCTAATCAGAATCCACGTGTTGGAGAGGGTTTGGCTACTTGGGTTCAGAAAAATAGACCACTTGAGGAAGCTGATATAGTTCTTTGGTACGTGTTTGGTGTGACACACATTCCTCGATTGGAAGACTGGCCAGTTATGCCAGTGGAACGCATTGGCTTTCTGCTTATGCCACATGGATTTTTCAATTGCTCCCCAGCAGTAGATGTTCCCCCAAGTGCAAGTGATTTGGATGATAAAGATAATGGGATATCTGCGAAGCCAATTCAAAATGGGGTGATTGCCAAGCTTTAA	2334	0.4533	MATAQEKATPNNLSNNPTASNSSAVPSSWAHPAADPFRNRPPVSALMSAVDSFPDPPPKTTSTTKGIPVMMRAQTCHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFVEVVLVEPDKQVIALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRKARLVVYNKRSNETSIWIVELREVHAATRGGHHRGKVISSKVIPNVQPPMDAVEYAECEAVVKDFPPFREAMKRRGIDDMDLVMVDAWCVGYHSETDAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYILVDMQNMEILEFEDRKLIPLPPADPLRNYTSGETRGGVDRSDVKPLQIIQPEGPSFRVNGHFIQWQKWNFRIGFTPREGLVIYSVAYIDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYVKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFYQASCIHVFVDGKIEAEVKLTGILSLGALQPGETRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKPGEAFNQVVEVDVKVEQPGENNVHNNAFYAEEKLLKSELEAMRDCNPLSARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYVPDEMQPGGEFPNQNPRVGEGLATWVQKNRPLEEADIVLWYVFGVTHIPRLEDWPVMPVERIGFLLMPHGFFNCSPAVDVPPSASDLDDKDNGISAKPIQNGVIAKL	777

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g03647	777	FunFam	Amine oxidase	207	310	-	-
	Vimu7g03647	777	Gene3D	Copper amine oxidase, catalytic domain	318	752	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	SUPERFAMILY	Amine oxidase catalytic domain	325	752	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	PANTHER	COPPER AMINE OXIDASE	72	761	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	Gene3D	-	207	310	-	-
	Vimu7g03647	777	Pfam	Copper amine oxidase, enzyme domain	331	747	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	MobiDBLite	consensus disorder prediction	1	41	-	-
	Vimu7g03647	777	SUPERFAMILY	Amine oxidase N-terminal region	74	203	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	FunFam	Amine oxidase	61	204	-	-
	Vimu7g03647	777	SUPERFAMILY	Amine oxidase N-terminal region	201	318	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	Pfam	Copper amine oxidase, N3 domain	202	305	IPR015802	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	Pfam	Copper amine oxidase, N2 domain	77	164	IPR015800	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu7g03647	777	FunFam	Amine oxidase	321	754	-	-
	Vimu7g03647	777	MobiDBLite	consensus disorder prediction	1	28	-	-
	Vimu7g03647	777	Gene3D	-	61	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g03647	Vimu-Chr7	31546928	31553726	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g03647	K00276		-	gmx:100778802	1464.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g03647	7	31546928	31553726	Vimu7g03647	7	31546928	31553726	ECH
	Vimu11g02146	11	37077740	37084053	Vimu7g03647	7	31546928	31553726	PCT
	Vimu7g03647	7	31546928	31553726	Vimu10g01302	10	13544176	13551179	PCT