LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g01302	ATGGCCACAGCTTCGCAAAAGGCGACGCCACCACTACCGCCGCCGCCGTCCTCTTCTTGCTGTACCGCCGCCGACTCCGCCGCCATTCCCCGTGCCGCCGCCCCGCAGCAAGAGTGGAACGCCGCCACCGACGTCCCTCTCATTCGTCCCGTCGATTCCTCCACCAATGCCTCTGCTGCCAAGGGAGTCACTGCAATGCCAAGGCCCCAGTCCAGCCACCCTTTGGACCCTTTAACTTCTGCTGAAATATCAGTGGCCGTGGCAACTGTGAGGGCCGCTGGAGCTACTCCTGAGCTTAGAGATAGTATGCGCTTCATTGAAGTAGTTTTACTGGAGCCCGATAAAAATGTTGTTGCACTGGCAGATGCATATTTCTTTCCGCCTTTCCAACCATCTTTACTTCCCAGAACTAGAGGAGGACCTTTAATTCCAACTAAACTCCCTCCAAGATGTGCTAGACTTGTTGTTTACAATAAGAAATCTAACTTGACTAGTATATGGATTGTTGAGTTGTTACAAGTACATGCTGTAACTCGAGGTGGTCATCACCGAGGAAAAGTAATTTCATCACATGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGAGGAATATGCAGAATGTGAGGCTGTAGTCAAAAGTTTTCCCCCATTTATAGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGACCTTGTAATGGTCGATCCCTGGTGTGTTGGTTATTATAGTGAAGCAGATGCTCCTGGGAGAAGACTTGCTAAACCCCTCATATTTTGTCAATCTGAGAGTGACTGCCCCATGGAAAATGGCTATGCTCGCCCAGTTGAGGGCATCTATGTTCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGATCGTAAACTTGTTCCCCTTCCACCAGTTGATCCCTTGAGGAATTATACTCCGGGTGAAACCAGAGGTGGCTCTGATAGAAGTGACGTAAAACCGTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTCCGTGTCAATGGGTATTTTGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAAGAAGGTTTGGTTATATATTCTGTTGCATATGTTGATGGTAGTCATGGGCGAAGGCCTGTTGCTCATAGGCTGAGTTTTGCGGAGATGGTTGTTCCGTATGGAGATCCCAACGACCCACATTATCGGAAAAATGCTTTTGATGCCGGGGAAGATGGCTTGGGAAAAAATGCACATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACATCAAGTATTTTGATGCTCACTTCACTAATTTCACCGGTGGGGTGGAAACAATTGAAAACTGTGTATGTTTACATGAAGAAGATCACGGAATTCTCTGGAAGCATCAAGATTGGAGAACTGGCTTAGCAGAAGATGGAAGGATTGAAGCTGAAGTCAAGCTTACTGGAATTCTTAGCCTAGGGGCCTTGCTGCCTGGAGAGTTTAGGAAATATGGAACCATGATTGCACCTGGTCTATATGCACCAGTTCATCAACACTTTTTTGTTGCTCGTATGGACATGTCTGTTGATTCTAAACCAGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAATTGAGGAACCAGGTGAGAATAATGTTCATAACAATGCTTTCTATGCTGAAGAGACTTTGCTTAGATCTGAATTGGAAGCCATGCGAGATTGTAATTCTTTGACCGCTCGACATTGGATTGTAAGGAACACTAGAACATGCAATAGAACTGGCCAGTTGACGGGATACAAGCTGGTACCTGGCTCAAACTGCTTACCATTGGCAGGTTCGGAAGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATTTTTGGGTAACAACATATTCACGTAATGAAATGTTTCCTGGAGGAGAATTTCCAAATCAAAATCCGCGTGTTGGGGAAGGACTAGCTACATGGGTTAAGCAGAACCGATCTTTGGAAGAAACTAATATAGTTCTTTGGTATGTATTTGGAATCACACATGTTCCCCGTTTGGAAGACTGGCCGGTTATGCCAGTAGAGCACATTGGTTTTATGCTCACGCCTCATGGATTCTTCAATTGTTCCCCTGCAGTAGACGTCCCACCTAATGCATGTGAAATGGATTCTAAAGATAATGACATTAAGGATAATGGTTCTTCGAAGCCAATTCAGAGTGGGTTGACGGCAAAGCTGTAA	2226	0.4524	MATASQKATPPLPPPPSSSCCTAADSAAIPRAAAPQQEWNAATDVPLIRPVDSSTNASAAKGVTAMPRPQSSHPLDPLTSAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKNVVALADAYFFPPFQPSLLPRTRGGPLIPTKLPPRCARLVVYNKKSNLTSIWIVELLQVHAVTRGGHHRGKVISSHVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYYSEADAPGRRLAKPLIFCQSESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGETRGGSDRSDVKPLQIIQPEGPSFRVNGYFVEWQKWNFRIGFTPKEGLVIYSVAYVDGSHGRRPVAHRLSFAEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEDGRIEAEVKLTGILSLGALLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMSVDSKPGEALNQVVEVNMKIEEPGENNVHNNAFYAEETLLRSELEAMRDCNSLTARHWIVRNTRTCNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNFWVTTYSRNEMFPGGEFPNQNPRVGEGLATWVKQNRSLEETNIVLWYVFGITHVPRLEDWPVMPVEHIGFMLTPHGFFNCSPAVDVPPNACEMDSKDNDIKDNGSSKPIQSGLTAKL	741

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g01302	741	FunFam	Amine oxidase	203	306	-	-
	Vimu10g01302	741	Gene3D	Copper amine oxidase, catalytic domain	470	712	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	Pfam	Copper amine oxidase, N3 domain	198	301	IPR015802	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	Gene3D	-	55	200	-	-
	Vimu10g01302	741	FunFam	Amine oxidase	57	200	-	-
	Vimu10g01302	741	Gene3D	Copper amine oxidase, catalytic domain	317	469	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	Pfam	Copper amine oxidase, N2 domain	73	156	IPR015800	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	Gene3D	-	202	305	-	-
	Vimu10g01302	741	SUPERFAMILY	Amine oxidase N-terminal region	71	198	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	PANTHER	COPPER AMINE OXIDASE	69	470	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vimu10g01302	741	SUPERFAMILY	Amine oxidase catalytic domain	321	712	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	Pfam	Copper amine oxidase, enzyme domain	470	707	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	Pfam	Copper amine oxidase, enzyme domain	327	468	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vimu10g01302	741	MobiDBLite	consensus disorder prediction	717	741	-	-
	Vimu10g01302	741	MobiDBLite	consensus disorder prediction	56	75	-	-
	Vimu10g01302	741	SUPERFAMILY	Amine oxidase N-terminal region	197	315	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g01302	Vimu-Chr10	13544176	13551179	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g01302	K00276		-	gmx:100798722	1386.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g01302	10	13544176	13551179	Vimu10g01302	10	13544176	13551179	ECH
	Vimu7g03647	7	31546928	31553726	Vimu10g01302	10	13544176	13551179	PCT