Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02146 ATGGCCACAGCTCAGGAAAAAACGACGCCATGTTGCGCCACCGGAACGAACAAACCGTCTTCTTCTGCGTCGCTCCAATCACAACAACAACCACAACAACAACAACAACAACCATCACAACAGCAACAACAACGGTCCTCCGTTGCCACCTTCATTCCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAGGTATCACAGTCATGGTGAGAGCTCAAACCAGCCATCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCAACCGTTCGAGCAGCTGGAAGAACACCTGAGGTGAGGGATGGCATGCGCTTTATTGAAGTAGACCTGGTAGAACCAGAAAAGCAAGTTGTTGCATTAGCAGATGCATATTTCTTCCCTCCTTTCCAACCATCACTGCTCCCCAGGACCAAAGGTGGACCTGTGATTCCAACTAAACTGCCTCCAAGGCAAGCAAGACTAGTTGTTTACAATAAAAAGTCAAATGAGACAAGCATATGGATTGTTGAGCTTAGAGAAGTTCACGCAGCAACTCGAGGTGGACACCATAGGGGCAAAGTTGTTTCATCTACAGTTGTTCCAGATGTTCAGCCTCCAATGGATGCTGTGGAGTATGCTGAGTGTGAAGCTGTTGTGAAGGACTTTCCGCCATTTCGTGAAGCAATGAAGAAGAGAGGCATTGAGGATATGGATCTCGTAATGGTGGATCCCTGGTGTGCTGGATACCACAGCGAAGCTGATGCTCCTAGCCGAAGACTTGCTAAACCACTAATCTTTTGTAGAACTGAAAGCGACTGCCCCATGGAGAATGGCTATGCCCGTCCAGTTGAGGGAATTCATGTACTTGTTGACATGCAAAATATGGTTGTTCTTGAATTTGAAGACCGTAAACTTGTTCCCCTTCCACCTGCTGATCCACTAAGAAATTATACTTCTGGTGAAACCCGGGGAGGAGTTGACCGAAGTGATGTGAAACCCTTACAGATTATTCAGCCTGAAGGTCCAAGTTTTCGTGTTAATGGACACTTCATTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCTAGGGAAGGGTTGGTTATTCATTCAGTAGCCTATATTGATGGAAGTCGAGGACGAAGACCAGTGGCCCACAGATTGAGCTTTGTTGAGATGGTGGTCCCGTATGGAGATCCTAATGATCCTCACTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCCTGGGTAAGAATGCTCATTCTCTCAAGAAGGGCTGTGATTGTTTAGGCTATATCAAATACTTTGATGCACACTTCACTAACTTCTATGGAGGTGTTGAAACTACCGAGAACTGTGTTTGCTTGCATGAGGAAGATCATGGTATTTTATGGAAGCATCAAGATTGGAGAACCGGTTTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACCGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGCAAATAGTGCTGTCAGGGATTCAAGCGGAAGGTCATGTTATGATGGAAAAATAGAAGCAGAGGTTAAGCTCACTGGAATTCTCAGCTTAGGAGCATTACAACCAGGTGAAACACGAAAATATGGCACAACTATTGCACCTGGACTGTATGCGCCTGTCCACCAACATTTTTTTGTTGCCCGTATGGACATGGCAGTTGATTGCAAACCTGGCGAAGCATTTAATCAGGTTGTTGAGATGAATGTCAAAGTTGAAGAGCCAGGAGAAAATAATATTCATAACAATGCATTTTATGCTGAGGAAAAACTGCTTAAATCAGAATTGGAAGCAATGCGTGACTGTGATCCTTTATCCGCTCGTCACTGGATTGTTAGGAACACAAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGTTTTTGAGAAGAGCAGCTTTCCTGAAACACAACCTTTGGGTTACTCCTTATGCACGCGATGAAATGCATCCTGGCGGAGAGTTCCCTAATCAAAATCCACGCGTTGGAGAGGGTTTGGCTACTTGGGTTAAGCAAAACCGATCACTGGAGGAAGCTGATATAGTTCTTTGGTACGTATTTGGAGTGACACACATTCCTCGATTGGAAGACTGGCCTGTTATGCCCGTGGAACGCATTGGTTTCATGCTTATGCCGCATGGTTTTTTCAATTGCTCGCCAGCAGTAGATGTTCCACCAAACCCAGGTGATTTGGATGATAAAGAGAACAATGGCTTGCCTGCCAAGCCTATTCAAAATGGGCTAATTGCCAAGCTTTGA 2355 0.4518 MATAQEKTTPCCATGTNKPSSSASLQSQQQPQQQQQQPSQQQQQRSSVATFIPAIDSPPKTASAKGITVMVRAQTSHPLDPLTAAEISVAVATVRAAGRTPEVRDGMRFIEVDLVEPEKQVVALADAYFFPPFQPSLLPRTKGGPVIPTKLPPRQARLVVYNKKSNETSIWIVELREVHAATRGGHHRGKVVSSTVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDPWCAGYHSEADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIHVLVDMQNMVVLEFEDRKLVPLPPADPLRNYTSGETRGGVDRSDVKPLQIIQPEGPSFRVNGHFIEWQKWNFRIGFTPREGLVIHSVAYIDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFYGGVETTENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFYQANSAVRDSSGRSCYDGKIEAEVKLTGILSLGALQPGETRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKPGEAFNQVVEMNVKVEEPGENNIHNNAFYAEEKLLKSELEAMRDCDPLSARHWIVRNTRTVNRTGHLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYARDEMHPGGEFPNQNPRVGEGLATWVKQNRSLEEADIVLWYVFGVTHIPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPPNPGDLDDKENNGLPAKPIQNGLIAKL 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02146 784 Gene3D Copper amine oxidase, catalytic domain 318 758 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 Gene3D - 207 310 - -
Vimu11g02146 784 MobiDBLite consensus disorder prediction 758 784 - -
Vimu11g02146 784 FunFam Amine oxidase 321 760 - -
Vimu11g02146 784 PANTHER COPPER AMINE OXIDASE 72 767 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 Pfam Copper amine oxidase, N3 domain 202 305 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 Pfam Copper amine oxidase, enzyme domain 331 753 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 Pfam Copper amine oxidase, N2 domain 77 165 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 SUPERFAMILY Amine oxidase N-terminal region 201 318 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 MobiDBLite consensus disorder prediction 1 48 - -
Vimu11g02146 784 FunFam Amine oxidase 207 310 - -
Vimu11g02146 784 SUPERFAMILY Amine oxidase N-terminal region 74 203 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 SUPERFAMILY Amine oxidase catalytic domain 325 758 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vimu11g02146 784 FunFam Amine oxidase 61 204 - -
Vimu11g02146 784 Gene3D - 60 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02146 Vimu-Chr11 37077740 37084053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02146 K00276 - gmx:100783091 1482.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02146 11 37077740 37084053 Vimu7g03647 7 31546928 31553726 PCT