Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03216 ATGGCAGGGAAGAACCTATATATTAGATTCAGTTGCACTACAGGGGATGCCATGGGGATGAACATGGTTTCGAAAGGAGTTCAGAACGTGCTTAATTTTCTTCAGAGCGACTTCCCTGACATGGACGTTCTTGGGATATCAGGGAATTTCTGTTCCGATAAGAAAGCTGCGGCAGTGAACTGGATTGAGGGGAGAGGAAAGTCGGTGGTGTGCGAGGCTCTTATTAAGGAGGAGGTGGTTAAGAAAGTGTTGAAGACTAGCGTGGAGGCTTTGGTGGAACTTAATATGTTGAAGAACCTTACTGGGTCAGCCATGGCAGGTGCTCTTGGTGGCTTCAATGCCCATGCTAGTAACATCGTTTCTGCAGTTTACTTGGCCACTGGACAGGATCCTGCTCAGAATGTGGAGAGTTCTCACTGCATAACTATGATGGAAGCTGTCAACGACGCCAAGGACCTTCACATCTCTGTCACCATGCCTTCCATTGAGGTGGGTACAGTTGGAGGGGGCACCCAACTGGCATCTCAATCAGCTTGTCTTAATCTACTGGGTGTTAAGGGTGCGAGCAAAGAGTCCCCCGGTGCAAATTCTAGGTTACTAGCAACCATAGTAGCTGGTTCAGTCCTGGCCGGAGAACTCTCACTCATGTCTGCAATTTCAGCCGGCCACCTTGTGAATAGCCATATGAAATACAACAGGTCTTGCAAGGATATCTCTCAAGTTGTTTCTTAA 732 0.4795 MAGKNLYIRFSCTTGDAMGMNMVSKGVQNVLNFLQSDFPDMDVLGISGNFCSDKKAAAVNWIEGRGKSVVCEALIKEEVVKKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEAVNDAKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAISAGHLVNSHMKYNRSCKDISQVVS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03216 243 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 164 171 IPR023076 GO:0004420
Vimu7g03216 243 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 44 228 - -
Vimu7g03216 243 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 236 IPR002202 GO:0004420|GO:0015936
Vimu7g03216 243 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 23 223 IPR009029 GO:0015936|GO:0016616
Vimu7g03216 243 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 2 66 IPR009023 -
Vimu7g03216 243 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 1 233 IPR002202 GO:0004420|GO:0015936
Vimu7g03216 243 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 1 66 - -
Vimu7g03216 243 CDD HMG-CoA_reductase_classI 1 233 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vimu7g03216 243 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 218 231 IPR023076 GO:0004420
Vimu7g03216 243 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 9 23 IPR023076 GO:0004420
Vimu7g03216 243 Gene3D - 1 66 IPR009023 -
Vimu7g03216 243 Gene3D - 67 221 IPR023074 GO:0004420
Vimu7g03216 243 Pfam Hydroxymethylglutaryl-coenzyme A reductase 2 233 IPR002202 GO:0004420|GO:0015936
Vimu7g03216 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 47 72 IPR002202 GO:0004420|GO:0015936
Vimu7g03216 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 98 124 IPR002202 GO:0004420|GO:0015936
Vimu7g03216 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 7 25 IPR002202 GO:0004420|GO:0015936
Vimu7g03216 243 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 152 173 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03216 Vimu-Chr7 27251560 27254019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03216 1 239 Lipid Metabolism Gene Families AT1G76490 84.937 2.85e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03216 K00021 - gmx:100790033 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00695 1 4447107 4450803 Vimu7g03216 7 27251560 27254019 ECH
Vimu7g03216 7 27251560 27254019 Vimu7g03216 7 27251560 27254019 ECH
Vimu7g03216 7 27251560 27254019 Vimu7g03215 7 27250472 27251335 PCT