Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00695 ATGGACCTCCGCCACCGCGTGCCCCCCACCGCCCACGACGGAGCTATCCACCATCCCAACCGCCGGAAGAGGGATTCCTCTCCCACATCATCAGCGTCCTCTCCTAAGGCCTCCGACGCGCTCCCTCTGCCACTATACCTCACCAACGCCATCTTCTTCACTCTCTTCTTCTCCGTCGCATACTTCCTCCTGCACCGGTGGCGCGACAAGATCCGCAGCCACACACCTCTGCACGTAGTCACGCTCTCCGAGATTGCCGCGATTTTCTCCCTCATTGCCTCATTCATCTACCTCCTCGGTTTTTTCGGCATCGACTTCGTGCAGTCCTTCATCACACGCGCCTCGCACGACGTGTGGGACGTCGATGAAGCTGTTTCGGAATCCTCGCCCAGGCCCTCGCCCTCTACGTCAATTACCAAATTGCCCCCGGTTGAGTGCTCGTTGATCTCCCAAGACGATGAGGACATTGTCCGCTCTGTTGTTAACGGCGTTACGCCGTCCTATGCGCTCGAGTCTCGCCTTGGAGACTGTCGCCGTGCGGCGGCGATTCGGCGCGCGGCTCTGCAGAGGATGACGGGGCGGTCGCTGGAGGGGCTGCCGCTGGACGGGTTCGATTACGATTCGATTTTGGGGCAGTGCTGCGAAATGCCGGTGGGATACGTGCAGATTCCTGTGGGGGTGGCGGGGCCGTTGCTGCTGGACGGGTTCGAGTACACGGTGCCGATGGCCACCACGGAGGGGTGCCTTGTCGCCAGCACCAATCGAGGGTGCAAAGCTATATATGCATCTGGTGGGGCCAGCAGTGTTGTTTTGAGGGATTGCATGTCAAGGGCCCCTGTTGTCAGGTTCTCCACTGCTAAGAGGGCTGCACAGTTGAAGTTCTTCTTGGAGGATCCCCTCAATTTTGATACCCTTTCCGTTGTTTTCAACAGGTCGAGTAGATTTGCCAGGCTGCAAGGTATTCAGTGTGCTATGGCTGGAAAGAACGTTTATTTGAGATTCACTTGTAGCACGGGTGATGCCATGGGTATGAACATGGTTTCCAAAGGGGTGCAAAACGTTCTTGACTTTCTTCAGAATGATTTCCCTGATATGGATGTTATTGGCATTTCTGGAAATTATTGTTCGGATAAGAAGCCATCTGCAGTAAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATTATTAAAGAAGAAGTGGTGAAGAAGGTATTGAAGACAAACGTGTCTGCCCTGGTGGAGCTTAACATGCTTAAAAACCTTACTGGTTCCGCTATAGCTGGTGCTCTTGGTGGATTCAATGCCCATGCTAGTAACATTGTTTCTGCAGTCTTTATAGCCACTGGACAAGATCCAGCACAAAATATTGAGAGTTCCCATTGCATAACCATGATGGAAGCCGTTAATGATGGGAGGGACCTTCACATCTCGGTGACCATGCCTTCCATTGAGGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAGTCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCGAGCAAGGAGTCACCAGGATCAAACTCAAGACTTTTGGCCACCATTGTTGCTGGATCTGTTTTAGCCGGAGAGTTGTCTCTGATGTCTGCCATTGCAGCGGGGCAGTTAGTCAACAGCCACATGAAATACAACAGATCAAGCAAAGATGTAACCAAAATATCATCTTGA 1704 0.5252 MDLRHRVPPTAHDGAIHHPNRRKRDSSPTSSASSPKASDALPLPLYLTNAIFFTLFFSVAYFLLHRWRDKIRSHTPLHVVTLSEIAAIFSLIASFIYLLGFFGIDFVQSFITRASHDVWDVDEAVSESSPRPSPSTSITKLPPVECSLISQDDEDIVRSVVNGVTPSYALESRLGDCRRAAAIRRAALQRMTGRSLEGLPLDGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGASSVVLRDCMSRAPVVRFSTAKRAAQLKFFLEDPLNFDTLSVVFNRSSRFARLQGIQCAMAGKNVYLRFTCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPSAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVSALVELNMLKNLTGSAIAGALGGFNAHASNIVSAVFIATGQDPAQNIESSHCITMMEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVTKISS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00695 567 MobiDBLite consensus disorder prediction 1 37 - -
Vimu1g00695 567 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 379 552 - -
Vimu1g00695 567 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 275 390 IPR009023 -
Vimu1g00695 567 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 488 495 IPR023076 GO:0004420
Vimu1g00695 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 331 349 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 371 396 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 422 448 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 476 497 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 240 260 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 213 234 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 274 390 - -
Vimu1g00695 567 Gene3D - 224 544 IPR023074 GO:0004420
Vimu1g00695 567 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 153 557 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 153 557 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vimu1g00695 567 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 25 561 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 Pfam Hydroxymethylglutaryl-coenzyme A reductase 181 557 IPR002202 GO:0004420|GO:0015936
Vimu1g00695 567 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 146 546 IPR009029 GO:0015936|GO:0016616
Vimu1g00695 567 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 149 223 - -
Vimu1g00695 567 CDD HMG-CoA_reductase_classI 154 557 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vimu1g00695 567 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 542 555 IPR023076 GO:0004420
Vimu1g00695 567 Gene3D - 149 223 IPR023282 GO:0004420
Vimu1g00695 567 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 333 347 IPR023076 GO:0004420
Vimu1g00695 567 Gene3D - 274 390 IPR009023 -
Vimu1g00695 567 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00695 Vimu-Chr1 4447107 4450803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00695 1 563 Lipid Metabolism Gene Families AT1G76490 74.570 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00695 K00021 - gmx:100777317 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00695 1 4447107 4450803 Vimu7g03216 7 27251560 27254019 ECH
Vimu1g00695 1 4447107 4450803 Vimu1g00695 1 4447107 4450803 ECH