Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03215 ATGGAAGTTCGCCGGCGACCCAACCGCTCCTCTCGCGTCGGCGAATCCCTGAAACAACCCGACCCTAATCCAAACCACGACGCCCACTCCCACCTCACCAACGCCCTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTTCCTCCTCCACCGATGGCGGGAGAAGATCCGTACCTCCACCCCTCTCCACCTCGTTACGCTCTCCGAGATTGCCGCAATCCTCTCCCTCATCGCCTCCTTCGTCTACCTAATGGCCTTCTTCGGCATTACCTTCATCCTCCACCCTTTCCTTAACTCCCGCACCTCCCCCGACGACGACCTCGACCTCCACATTACCAAACCCCCCGTCCCACCTCTCTCCCCGCCGCTGCCGCTCCCTCACGACAATCGTGACCTCGTCCTCGCCGTCGTCTCCGGCTCCGTCCCCTCCTACTCCCTCGAGTCCCGCCTCGGAGACTGCCGTCGCGCCGCAGAGATCCGCCGCGAGGCGGTCGAGAGCCTCACCGGGAGGTCCCTCAAAGGCCTCCCTGTCGAAGGCTTCGATTACGACTCCATTCTCGGGCAGTGCTGCGAGATGCCGATTGGGTTCGTTCAGATCCCGGTAGGCGTCGCCGGACCGCTTCTTCTCGACGGGAACGAGTACACCATCCCCATGGCCACCACCGAGGGGTGCTTGGTCGCCAGCACCAATAGAGGCTGCAAGGCCATTCACCTCTGCGGCGGAGCTTCCTCCATGCTCCTCCGTGACGCCATGACCAGAGCCCCCGTGGTTCGGTTCGCCTCCGCCAAACGCGCCTCTCAGCTCAAGTTCTTCCTCGAAGATCCTCTCAATTTCGAATCCCTCGCCGTCGTTTTCAACAAGTAA 864 0.6192 MEVRRRPNRSSRVGESLKQPDPNPNHDAHSHLTNALFFTLFFSVAYFLLHRWREKIRTSTPLHLVTLSEIAAILSLIASFVYLMAFFGITFILHPFLNSRTSPDDDLDLHITKPPVPPLSPPLPLPHDNRDLVLAVVSGSVPSYSLESRLGDCRRAAEIRREAVESLTGRSLKGLPVEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGNEYTIPMATTEGCLVASTNRGCKAIHLCGGASSMLLRDAMTRAPVVRFASAKRASQLKFFLEDPLNFESLAVVFNK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03215 287 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 125 247 IPR009029 GO:0015936|GO:0016616
Vimu7g03215 287 Gene3D - 126 199 IPR023282 GO:0004420
Vimu7g03215 287 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 125 199 - -
Vimu7g03215 287 Pfam Hydroxymethylglutaryl-coenzyme A reductase 157 286 IPR002202 GO:0004420|GO:0015936
Vimu7g03215 287 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 251 286 IPR009023 -
Vimu7g03215 287 Gene3D - 200 248 IPR023074 GO:0004420
Vimu7g03215 287 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 216 236 IPR002202 GO:0004420|GO:0015936
Vimu7g03215 287 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 189 210 IPR002202 GO:0004420|GO:0015936
Vimu7g03215 287 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 129 287 IPR002202 GO:0004420|GO:0015936
Vimu7g03215 287 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 29 287 IPR002202 GO:0004420|GO:0015936
Vimu7g03215 287 Gene3D - 250 286 IPR009023 -
Vimu7g03215 287 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03215 Vimu-Chr7 27250472 27251335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03215 1 287 Lipid Metabolism Gene Families AT1G76490 54.819 1.48e-120 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03215 K00021 - gmx:100790033 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03215 7 27250472 27251335 Vimu7g03215 7 27250472 27251335 ECH
Vimu7g03216 7 27251560 27254019 Vimu7g03215 7 27250472 27251335 PCT