Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01755 ATGGGTGTTTTCACTTCTGAAAGCGAACTCGTTTCTCCAGTCTCCGCTGCAAAGTTGTTCAAAGCCATTGTCATAGATGCCGCCAACGTCTTCCCAAAAGCATTACCAAACTTGATTAAGAGCGCAGAAACCATCGAAGGAGACGGAGGACCAGGAACCATTAAGAAGCTCACTCTTGCTGAAGGTTTAGGGTTTGTGAAGCACCAGGTAGATGCAATAGACACAGAAAACTATGTGTACAACTACAGTGTGATTGAAGGAAGTGCACTGTCGGAAACATTGGAGAAGATATCTTATGAGTACAAATTAGTGGGAAGCGGTGATGGAGGATCGATTGTGAAGTGCATGAGCAAATACTATACGAAAGGTGATGAGAAACTCGCTGAAGAATTTGTGAAGGCTGCCAAGGAGAGATCTGCTGCATTCACTAAGGCTATTCAGGATTTCATTCTGGCTAATCCTCATTACAATTAA 474 0.4325 MGVFTSESELVSPVSAAKLFKAIVIDAANVFPKALPNLIKSAETIEGDGGPGTIKKLTLAEGLGFVKHQVDAIDTENYVYNYSVIEGSALSETLEKISYEYKLVGSGDGGSIVKCMSKYYTKGDEKLAEEFVKAAKERSAAFTKAIQDFILANPHYN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01755 157 PANTHER - 1 155 - -
Vimu7g01755 157 Pfam Pathogenesis-related protein Bet v 1 family 1 152 IPR000916 GO:0006952
Vimu7g01755 157 SUPERFAMILY Bet v1-like 2 157 - -
Vimu7g01755 157 PRINTS Major pollen allergen Bet V1 signature 142 152 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01755 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01755 157 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01755 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01755 157 PRINTS Major pollen allergen Bet V1 signature 83 96 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01755 157 PRINTS Major pollen allergen Bet V1 signature 64 83 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01755 157 FunFam Major pollen allergen Bet v 1-A 1 157 - -
Vimu7g01755 157 Gene3D - 2 157 IPR023393 -
Vimu7g01755 157 SMART Bet_v_1_2 1 153 IPR000916 GO:0006952
Vimu7g01755 157 CDD Bet_v1-like 4 146 - -
Vimu7g01755 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 87 119 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01755 Vimu-Chr7 16180507 16181362 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01755 - - gmx:100306363 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01755 7 16180507 16181362 Vimu7g01755 7 16180507 16181362 ECH
Vimu7g01755 7 16180507 16181362 Vimu10g00147 10 846144 846847 PCT
Vimu10g00152 10 864106 867281 Vimu7g01755 7 16180507 16181362 PCT