Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00152 ATGGGGGCACTCACTTTCACAGAGGAGTTTACTAGCACTGTCCAGCCAGGAAGGTTGTTCAAGGCTTTGATCCTTGATGCTCCAAACCTCATCCCCAAACTGATGCCTGAGGCCATTAAGAATGTTCAATTGGTTGAAGGGAATGGAGGTCCTGGAAGCATTCAGGAGATAACCATTGCTGAAGGTGATAAGATCAAACAGTTGAAGCATAGAATTGATGCAATTGACCCTGAGAAATTGACTTACAGCTACGCAGTGATTGAGGGGGATGATGCACTGAAAAAAGTGGATTCAATTTCGCATGAGATTAAGTTCGAGGCCACTGAAGAGGGAGGTTCCAAGACCAAAAATGTCAGCACTTATCAGCCCAAAGCAGGGGTTGATGTCAAAGAGGAGGATTTCAAGGCTGCAAAGGAAGAAGGCTTGGCTCTCCTCAAGGCAGTGGATGCTTATCTTGTGGCAAACCCAGAGGCTTATGCTTGA 483 0.4617 MGALTFTEEFTSTVQPGRLFKALILDAPNLIPKLMPEAIKNVQLVEGNGGPGSIQEITIAEGDKIKQLKHRIDAIDPEKLTYSYAVIEGDDALKKVDSISHEIKFEATEEGGSKTKNVSTYQPKAGVDVKEEDFKAAKEEGLALLKAVDAYLVANPEAYA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00152 160 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Vimu10g00152 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00152 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00152 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00152 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00152 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00152 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00152 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00152 160 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Vimu10g00152 160 CDD Bet_v1-like 5 152 - -
Vimu10g00152 160 PANTHER - 1 159 - -
Vimu10g00152 160 SUPERFAMILY Bet v1-like 4 159 - -
Vimu10g00152 160 Gene3D - 2 158 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00152 Vimu-Chr10 864106 867281 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00152 - - pvu:PHAVU_009G252400g 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00152 10 864106 867281 Vimu10g00152 10 864106 867281 ECH
Vimu7g01756 7 16190280 16190597 Vimu10g00152 10 864106 867281 PCT
Vimu10g00152 10 864106 867281 Vimu7g01755 7 16180507 16181362 PCT