LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g00147	ATGGGTGTTTTTGCTTATGATGATGAGAACTCCTCTACACTGCCTCCAGCAATATTGTACAAAGCTCTCACAAAAGATTCAGACAGCATCATCCCAAAGGTTATTCCTGTCATCCAGAGCATTGAAATTGTTGAAGGAAATGGTGGACCTGGAACCATCAAGAAGCTAACAGCTATTGAAGGTAGCGAAACGAGTTTTGTGCTGCAGAAAATCGATGCAGTGGACGAAGCTAACCTGGGATTTGATTACAGCATAGTGGGAGGACCAGGGTTGCATGAAAGTTTGGAGAAAATCACACTTCAGACAAAGGTTGTGCCTGGTCCTGATGGTGGTTCCATCTCCAAGGTCGCTGTCAAATACCACACCAAAGGCGATGCACCTCTCTTAGAAGCAGTGCTTGAAGAATCAAAGGCCAGGGGAACTGGTTTTTTCAAGGCTGTCGAGGGTTACGTTTTGGCAAACCCTGGAGAATACTAG	477	0.4549	MGVFAYDDENSSTLPPAILYKALTKDSDSIIPKVIPVIQSIEIVEGNGGPGTIKKLTAIEGSETSFVLQKIDAVDEANLGFDYSIVGGPGLHESLEKITLQTKVVPGPDGGSISKVAVKYHTKGDAPLLEAVLEESKARGTGFFKAVEGYVLANPGEY	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g00147	158	ProSitePatterns	Pathogenesis-related proteins Bet v I family signature.	88	120	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	SUPERFAMILY	Bet v1-like	6	156	-	-
	Vimu10g00147	158	PRINTS	Major pollen allergen Bet V1 signature	84	97	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	PRINTS	Major pollen allergen Bet V1 signature	109	125	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	PRINTS	Major pollen allergen Bet V1 signature	3	23	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	PRINTS	Major pollen allergen Bet V1 signature	65	84	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	PRINTS	Major pollen allergen Bet V1 signature	26	36	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	PRINTS	Major pollen allergen Bet V1 signature	49	58	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	PRINTS	Major pollen allergen Bet V1 signature	143	153	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Vimu10g00147	158	Pfam	Pathogenesis-related protein Bet v 1 family	1	153	IPR000916	GO:0006952
	Vimu10g00147	158	CDD	Bet_v1-like	6	151	-	-
	Vimu10g00147	158	Gene3D	-	2	157	IPR023393	-
	Vimu10g00147	158	FunFam	Major pollen allergen Bet v 1-A	1	158	-	-
	Vimu10g00147	158	PANTHER	-	1	156	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g00147	Vimu-Chr10	846144	846847	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g00147	-		-	gmx:100305867	238.039

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g00147	10	846144	846847	Vimu10g00147	10	846144	846847	ECH
	Vimu7g01755	7	16180507	16181362	Vimu10g00147	10	846144	846847	PCT
	Vimu10g00147	10	846144	846847	Vimu7g01752	7	16155324	16155865	PCT