Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03140 ATGGGATCCCAAACACAGTCTGAACTGCATGTGGTGGACTTCACTGATGCAACCATGAAGCCTGGCACCGATGCATGGTTCTCAGCCTGCAGTCATGTCAGGGAAGCACTTGAACAGAATGGTTGTTTTGTTGCACGATATGATAGAATTGGCAAGGAGCTGTCTGATTCTGTGGTATCTGCAATGGAAGAGTTGTTTAGTCTCCCAGTGGAAACCAAAGCACAAAAAACCAGTGACAAACCTTTCCATGGTTACTTAGGACAAGTCTCATGGCTTCCCTTGTATGAATCTTTGGGCATCGATGACCCTCTCACCTTACAAGGCTGCCAAAAATTCGCCCATATAATGGGGTTGCAGGGGAATCATCGTTTCTGTGAAAGCATCAATGAGTATGCTAAGTTGCTGGGAGAATTAGACCACATGGCAAAGAGAATGGTGTTAGAGAGCTATGGTGTGAACATGAAAGGATGCAAGCGCATGATAGAATCAAGCGATTATCTGCTTCGGTGCATGAAATATAGAACACCTGAGACGGATGAAAAGGATTTGGGAATGCATTCTCACACAGACTTAACCATCGTATCCATAGTTCATCAGCTGAATAATTTGAATGGCTTGGAAATCAAACTGAAGGATGGAGAATGGATTGGGGTTGATGCTTCTTCCTCCTTGTTTGTGGTTATGGCAGGTGACGCATTCAATGTGTGGAGTAATGGTAGAATACGACCATGTGAACACAGAGTTACCATGAATGCGAGGAAAACCAGATATTCTATGGGACTGTTTTCTTTTAATGGTGATAAGATTATGCAGATACCGGATGAAGTAGTAAATGAGCAACATCCCTTGCGTTATAAATCAATATTCGATCATTATGAATACCTTCGTTTCTATGAGAAAGAGAAAATCAAAGACCCTTATTCTCGAATTGAAGCCTACTGTGGAATTTCATCCCTGTAA 960 0.4229 MGSQTQSELHVVDFTDATMKPGTDAWFSACSHVREALEQNGCFVARYDRIGKELSDSVVSAMEELFSLPVETKAQKTSDKPFHGYLGQVSWLPLYESLGIDDPLTLQGCQKFAHIMGLQGNHRFCESINEYAKLLGELDHMAKRMVLESYGVNMKGCKRMIESSDYLLRCMKYRTPETDEKDLGMHSHTDLTIVSIVHQLNNLNGLEIKLKDGEWIGVDASSSLFVVMAGDAFNVWSNGRIRPCEHRVTMNARKTRYSMGLFSFNGDKIMQIPDEVVNEQHPLRYKSIFDHYEYLRFYEKEKIKDPYSRIEAYCGISSL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03140 319 SUPERFAMILY Clavaminate synthase-like 7 303 - -
Vimu6g03140 319 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 163 266 IPR005123 -
Vimu6g03140 319 Pfam 2OG-Fe(II) oxygenase superfamily 175 264 IPR044861 -
Vimu6g03140 319 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 2 303 - -
Vimu6g03140 319 Pfam non-haem dioxygenase in morphine synthesis N-terminal 11 85 IPR026992 -
Vimu6g03140 319 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 10 295 - -
Vimu6g03140 319 Gene3D - 7 316 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03140 Vimu-Chr6 27731574 27733501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03140 126 286 Glycosyltransferase AT5G59530 26.667 1.21e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03140 - - gmx:100775440 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03140 6 27731574 27733501 Vimu3g00494 3 4779035 4781140 PCT
Vimu3g00496 3 4782769 4784560 Vimu6g03140 6 27731574 27733501 PCT