Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00496 ATGATTCCTGTTCTAGATTTCAGCATGGAAGATTTGAAGCCAGGGAGCGATTCCTGGTTAGAAAGATGCAGAAGAGTGCGGGAAGCACTTGAAGAACATGGTTGTTTTGTAGCTGTGTATGATAAAGTTTGTGATGAGCTAGAAAACGGTGTTTTCTGCTCCATGAAGGAGCTGTTCGATCTCTCACCTGAAACCAAACGAAGAAACACATATGAGGGTTCGCCATTGAAGGGCTACGTTGGACAAATCCCCCAGATTCCCCTTCACCAAAGCATGGGAATAGACGAGGGAACAACCCTAGATGGAATTCAAAGCTTTACCCATAAAATGTGGCCAATAGGCAATCATCACTTTTGTAAATATATATTTGAGTATGCAAAGGTAGCAGAAGAATTGGACAAGATGGTGGGCAGAATGATATTTGAAAGTTATGGTGTTTCAGAATACTATGAGTCATACATGCGGTCTACAGGTTATCTCCTTAGGCTTTTGGCACACACAGCACCAGAAGAGGTTGAGCCTCAACTGGGTCTTGTGGCTCACACTGACAAGAGCTTCACCACAATTCTTCACCAAAATCATGTCAATGCACTCATGGTGGAGACAAGGAATGGTGTCTGGATTCATGTCGATTTCTCTTCGACAAATTCCTTTGTTGTCATGGCTGGCGATGGACTCATGGCTTGGAGCAATGACAGAATACAGTCCCCTAATCATAAGGTTGTGATGAATGGGAATGAAACAAGGTACTCTCTTGGTCTGTTTGCCTTCTACAAAGGAATTCTGAAAGTGCCTGAAGAGCTTATTGATGAAGAACATCCAATGCAGTATAAGCCCTTTGATCATCTTGGATTACTAAACTTCACTTACAGTGCTAATATGAAAGCTTATTGTGGTGTGTGA 903 0.4241 MIPVLDFSMEDLKPGSDSWLERCRRVREALEEHGCFVAVYDKVCDELENGVFCSMKELFDLSPETKRRNTYEGSPLKGYVGQIPQIPLHQSMGIDEGTTLDGIQSFTHKMWPIGNHHFCKYIFEYAKVAEELDKMVGRMIFESYGVSEYYESYMRSTGYLLRLLAHTAPEEVEPQLGLVAHTDKSFTTILHQNHVNALMVETRNGVWIHVDFSSTNSFVVMAGDGLMAWSNDRIQSPNHKVVMNGNETRYSLGLFAFYKGILKVPEELIDEEHPMQYKPFDHLGLLNFTYSANMKAYCGV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00496 300 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 155 258 IPR005123 -
Vimu3g00496 300 Pfam non-haem dioxygenase in morphine synthesis N-terminal 2 80 IPR026992 -
Vimu3g00496 300 Pfam 2OG-Fe(II) oxygenase superfamily 165 256 IPR044861 -
Vimu3g00496 300 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 1 294 - -
Vimu3g00496 300 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 2 282 - -
Vimu3g00496 300 SUPERFAMILY Clavaminate synthase-like 2 294 - -
Vimu3g00496 300 Gene3D - 1 298 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00496 Vimu-Chr3 4782769 4784560 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00496 122 278 Glycosyltransferase AT5G59530 27.879 1.33e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00496 - - vum:124839683 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03141 6 27736374 27738945 Vimu3g00496 3 4782769 4784560 PCT
Vimu3g00496 3 4782769 4784560 Vimu6g03140 6 27731574 27733501 PCT