Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00494 ATGATGGAAAGGCAAAGTATGCGTGAAAATCCCCTTCCTGTTGTTGACTTCTCCAATGAAAATATGAAGCCTGGCACTGATACATGGCTTGCAGCATGTGCAATGGTGCGTAGAGGATTTGAAGATCACGGTTGTTTCTTAGCACACTTCGACAAGGTTGCTCCAAACCTTATAAACTCCGTTTTCTGTGCAATGGAACAACTCTTTGATCTTCCACTGGAAACCAAAAGGAGAAAAACCAGTGACAAACCCAACCATGGCTACACTGGACAAGTACCCACCTCCCCTCTCTTCGAATCCTTTGCCATTCATAATCCATCCAACCTTAAACATTGTCAAAACTTCTCAAACATTATGTGGCCGACAGGAAATCATCATTTGTGTGAAAGTGTGAACGAGTATGCGAAGTTATTACAAGAACTGGACCGAACGGTGAAGAGAATGGTGTTTGATAGCTATGGCCTGGACAAGGTGAAATGCGATTCGTTCCTGGAATCAATCGAATATAGTTTTCGAAGCTACAAATATAAGATACCTGCGATGGATGAGAGCAACGTGGGGGTGAATTCTCATACGGATTCAACATTTATAACCATATTGCATCAGAGGGTAGATGGATTGGAAGTTCAATTGAAAGATGGAGAATGGTTTGCTATTCATGCCTCATCACCTTTCTTTTGTGTCTTGGCTGGTGATGCATTTATGGTGTGGAGTAGTGAAAGAATTCGAGCTTGTGAACACCGTGTGATTCTGAGATCAAACGTAACAAGGTACTCCTTAGGGTTACTTTCATACAGTGCTGAGATGGTGCAAACGTTAGAGGATTTAGTCGATGAAGAACATCCAATACGGTATAAGCCATTCGACCATTATTCGTATGTTGGTTTTCGTTTCACAGAAGAAGCCGTAAAGTGTACAAGTCGTATCAAAGCTTATTGTGGTCTTTAA 948 0.4167 MMERQSMRENPLPVVDFSNENMKPGTDTWLAACAMVRRGFEDHGCFLAHFDKVAPNLINSVFCAMEQLFDLPLETKRRKTSDKPNHGYTGQVPTSPLFESFAIHNPSNLKHCQNFSNIMWPTGNHHLCESVNEYAKLLQELDRTVKRMVFDSYGLDKVKCDSFLESIEYSFRSYKYKIPAMDESNVGVNSHTDSTFITILHQRVDGLEVQLKDGEWFAIHASSPFFCVLAGDAFMVWSSERIRACEHRVILRSNVTRYSLGLLSYSAEMVQTLEDLVDEEHPIRYKPFDHYSYVGFRFTEEAVKCTSRIKAYCGL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00494 315 Gene3D - 1 305 IPR027443 -
Vimu3g00494 315 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 293 - -
Vimu3g00494 315 Pfam non-haem dioxygenase in morphine synthesis N-terminal 12 90 IPR026992 -
Vimu3g00494 315 SUPERFAMILY Clavaminate synthase-like 7 300 - -
Vimu3g00494 315 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 5 302 - -
Vimu3g00494 315 Pfam 2OG-Fe(II) oxygenase superfamily 181 260 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00494 Vimu-Chr3 4779035 4781140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00494 186 286 Glycosyltransferase AT5G59530 24.299 2.38e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00494 - - pvu:PHAVU_007G248500g 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03140 6 27731574 27733501 Vimu3g00494 3 4779035 4781140 PCT
Vimu3g00494 3 4779035 4781140 Vimu6g03139 6 27729295 27730787 PCT